Flavobacterium psychrophilum V3-5: IA03_08240
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Entry
IA03_08240 CDS
T03659
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fpv
Flavobacterium psychrophilum V3-5
Pathway
fpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IA03_08240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpv03019
]
IA03_08240
Enzymes [BR:
fpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IA03_08240
Messenger RNA biogenesis [BR:
fpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IA03_08240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
V-ATPase_H_N
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
AIG30457
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All DBs
Position
1774976..1776220
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AA seq
414 aa
AA seq
DB search
MLFEDLSLSKSIQRAVFEEGYLSATPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPII
HNLHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVE
QLKSGINILIATPGRLLDLHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLYYVDKADKRQLLYHII
KEEKLSNILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACDILV
ATDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAISFCGKDEEGYWKDI
IKLTKAKVTTIDEHPFPWKKGAQEATKVNSSNRSGEKEKSRKSDASKKNKKRWY
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcattatcaaaaagtatacaaagagctgtttttgaagaaggt
taccttagcgcaacccctattcaagaacaatctatcccaattatattagcaggacaagac
ttaataggttgcgcacaaacaggaacaggaaaaacagccgcctttgcaattcctattatt
cataatctacacagaattgtaggttcatcaaaaaaagaaaaactaattcgcacacttgtt
gttactcctactcgcgagttggcagtacaaataggcgaaagtttcgacacttacggaaaa
tatacgaacttaaaacagctaactatttttggtggtgtatcgcaaaacccacaagtagaa
cagctaaaaagcggtatcaacattctaattgcaaccccaggaagattgctagatttacac
aaacaaggatttattaatttagaccatatgcaccatttagtgcttgacgaagccgaccaa
atgctagatatgggatttataaacgatgtaaaaaagattgtaaaactaacacctaaaaac
cgtcagaccttactattctctgcaacaatgcctattgcaattcgtgaacttgccgaaatg
ttccttacagatcccgcaacagtgcaagtagcacctgtatcctctacgatagaaacagta
gaccaacgcttgtattatgtagataaagctgacaaaagacaattattatatcatattatt
aaagaagaaaaactaagtaacattcttgttttttccagaacaaaacatggtgccgataat
attgccaaagcattaaaaaaacaagggctaaatgccgaagctattcacggagacaaatct
caaaatgcacgccaaagagctttagataattttaaaaacaaagcatgtgatattctcgta
gccacagatatcgctgctcgtggtattgatatagagtttttaccttatgtcattaatttc
gatttgcctaatattcccgaaacttatgtacacagaataggacgaaccggtcgtgcaggt
cgagaaggaatggctatttccttttgcggaaaagacgaagaaggctattggaaagatatt
ataaaactcacaaaagcaaaagttactacgatagacgaacacccatttccttggaaaaaa
ggtgcgcaagaagccacaaaagttaatagttctaaccgaagcggagaaaaggaaaaatct
agaaaatccgatgcatcaaagaagaataagaaacgctggtattaa
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