Flavobacterium psychrophilum V4-24: IA04_01600
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Entry
IA04_01600 CDS
T03660
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fpw
Flavobacterium psychrophilum V4-24
Pathway
fpw03030
DNA replication
fpw03430
Mismatch repair
fpw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IA04_01600
03430 Mismatch repair
IA04_01600
03440 Homologous recombination
IA04_01600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpw03032
]
IA04_01600
03400 DNA repair and recombination proteins [BR:
fpw03400
]
IA04_01600
Enzymes [BR:
fpw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IA04_01600
DNA replication proteins [BR:
fpw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IA04_01600
DNA repair and recombination proteins [BR:
fpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IA04_01600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
AIG36053
LinkDB
All DBs
Position
complement(362818..367344)
Genome browser
AA seq
1508 aa
AA seq
DB search
MYLIFDTETTGLPRSWSAPITDTNNWPRCIQIAWQLHDEMGNLIEHQDYLIKPEGFNIPY
DAERIHGISTELAIEQGVSLQEVLEQFNIALSKTKFIVGQNVGFDVNIMGCEFYRANISS
DMVKMPVLDTCTEVTASLLKLPGGRGGRFKLPTLTELHQYLFQIPFSEAHNATADVEATT
RCFLELIKREVFTKEELDVEAHYFHEFQRKNQGEIQLIGLKHINLKEASAEIAKRFQQAK
KVETKTPISTEITQNLANAKFAHLHNHTQFSVLQSTISVAKLVAAAAKNKMSAVAMTDHA
NLMGAFHFVRDVLNQNKTAAKKNATAIENGEEATEVEMKPIVGCEFFVCDNHKDKSKKDN
GYQVVFLAKNKKGYHNLAKMSSIAYTEGFYYVPRIDRNVIEQYKEDIIVLSGNLYGEIPS
KILNLGENQAEEALLWWKSKFKDDFYLELMRHNQEDENRVNQTLISFANKHEVKLIATNN
TFYISKDDANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSGEEMKQLFSDLPD
AIVNIQEIVDKIEIYSLYRDVLLPKFEIPTEFLVPEDQTDGGVRGENKYLHHLTYQGAKR
RYAEITPEIEERIDFELLTIQNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSVVAY
CLGITNIDPLLYNLLFERFLNPDRVSLPDIDIDFDDEGRSKVMDYVIEKYGKKQVAQIIT
YGTMAAKSAIRDTARVLDLPLFEADKIAKLLPGMLPGKWNLARFMNDTEVEIKKVLRPED
FDRMKELILLSKEEDLGGETIQQAQILEGNLRNTGIHACGVIITPSDITNFVPVTTAKDS
DLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIQLDPDTFPIDDVKTYE
LFQRGETVGIFQYESAGMQKYMKELKPTVFNDLIAMNALYRPGPIAYIPSFIKRKNGEEP
IEYDLEACEELLKDTYGITVYQEQVMLLSQRLADFSKGDADVLRKAMGKKQRDVLDKMKP
KFVSQAVAKGHAEDKLEKIWKDWEAFAEYAFNKSHSTCYAWIAYQTAYLKANYPAEYMAA
VLSNNMSDIKQVSFFMEECKRMGLAVLGPDVNESFYKFTVNDDYAVRFGIGAVKGVGMGA
VNTIVENRKDGSYKSIFDLAKRVDQRAANKKAIENLILAGGFDCFENTHRAQYFHTDGDN
LTFYEKAIRFGAKFQENENSSQVSLFGDTSDVQISEPLIPPCEEWNTMEKLAKEKEVVGI
YISGHPLDDYKFEMKYFCNNKLESLKNLEQFVGKNLAFGGIVTNVQHRTAKNGKGWATFV
LEGYDENNEFRIFNEEYLKFRHFLVQNQFVYIRVNIKDGWVNRDTGKKSDPQINFLQVES
IQDVLRIFAKKLVIHLDINVLQEELVSQLITIFDANKGDNTVSFDILELERIKKQIEAVP
LEANDIEVALDENGDIQESENPEPTITTEVEETKIINKISMNSRKLKIKISNELLNELEG
LQINFKLN
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatcttcgataccgaaaccacaggattacctcgcagttggtctgcaccaata
acagatactaacaactggcctcgttgtatccaaatcgcatggcaattgcacgatgagatg
ggaaatcttatcgaacatcaagattatctaatcaaaccagaaggatttaatattccttat
gatgccgaacgtattcatggtatttctaccgaattggcaatagaacaaggcgtatcattg
caagaagttttagagcaatttaatatcgctctttcaaaaactaaatttatagttggacaa
aatgtaggcttcgatgtcaatattatgggttgcgaattttatcgtgccaatattagttca
gatatggtaaaaatgccagttttagatacctgcaccgaagttactgcatcactactaaaa
ttacctggaggtcgtggcggaagattcaaattaccaacacttacagaacttcatcaatat
ttatttcaaattccgttttcggaagcacacaatgctactgccgatgttgaagcaacgact
cgttgttttttagaattaataaaaagagaagtttttaccaaagaagaactcgacgttgaa
gcacattattttcacgaatttcaacgcaaaaaccaaggagaaattcaacttataggttta
aaacacataaacctaaaagaagcttctgccgagatagccaaacgttttcaacaagctaaa
aaagttgaaacaaaaacgccaatttcaacagaaattacgcaaaatttagcaaacgcaaaa
tttgcacatttgcacaatcacacacagttttcggttttacaatctacaatatcggtagca
aaattagtagctgcagccgcaaaaaacaagatgtcggccgttgctatgacagaccatgcc
aatttgatgggtgcttttcattttgttcgagatgttttgaatcagaataagactgccgct
aaaaaaaatgctactgcaatagaaaacggagaagaagccactgaagtagaaatgaaaccc
atcgtgggctgcgaattttttgtttgcgacaaccacaaagacaaatccaaaaaagacaat
ggttaccaagttgttttcttggcaaaaaacaaaaaaggctatcataatttagccaaaatg
tcttctattgcatacacagagggtttttattatgtacccagaatagacagaaatgtaatc
gaacaatacaaggaagatattattgttttatcaggaaatttatacggagaaattcctagc
aaaatcctaaaccttggcgaaaatcaggcagaagaagccttactttggtggaaatcgaaa
tttaaagacgatttctatctcgaattgatgcgacacaatcaagaagacgaaaatcgtgtc
aatcaaacattaatatcttttgcaaacaagcatgaagtaaaactcattgcaaccaataat
actttttacatctctaaagacgatgccaatgcccatgatattttgctatgtgtaaaagaa
ggagaaaaacaagcaactccaataggtcgtggtcgtggctatcgatttggcctgcctaat
caggaatattatttcaaatcgggagaagaaatgaaacaattattttctgatttaccagat
gccattgtcaatattcaagaaattgtagataaaatagaaatttactcgctttatagagac
gttttacttccaaagtttgaaattccaacagagtttttagttcccgaagaccaaactgat
ggcggcgttcgaggagaaaacaaatacttgcatcatcttacttaccaaggtgccaaaaga
cgctatgccgaaataacacccgaaatagaagaaagaatagatttcgaattactaaccata
caaaactcaggataccctggttatttcttaatcgtgcaagattttattgccgaagccaga
aaaatggacgtttctgttggaccaggacgtggttctgcagcaggttccgttgttgcctat
tgcttaggaattacgaatatcgacccccttttatacaatctgcttttcgaaagattctta
aatccagatcgtgtatcgcttcccgatatcgatatcgattttgatgacgaaggacgtagc
aaagtcatggattatgtgattgaaaaatacgggaaaaaacaagttgcacaaattattaca
tacggtactatggcagcaaaatctgccattcgtgataccgccagagtattagacttaccg
ctttttgaagccgataaaattgccaaattattacccggaatgcttcccggaaaatggaat
ttagcccgttttatgaacgacaccgaagttgaaattaaaaaagtcttacgaccagaagat
ttcgaccgaatgaaagaattaatattactctctaaagaagaagatttaggcggagaaacc
attcaacaagcacaaatcctagaaggaaatcttcgcaacacaggaattcatgcttgtgga
gttattattactccaagcgacattactaattttgttcctgtaaccaccgctaaagattca
gatttatatgttacacaatttgacaactccgttgccgaaagtgcaggattattaaaaatg
gatttcttaggactaaaaaccctaaccttaataaaagacactgtaaaacttgtcaaatat
agaacgggaatacaactcgatccagacacatttcctattgatgatgtaaagacttatgaa
ttatttcaacgtggcgaaacagtaggaatttttcagtacgaaagtgcaggtatgcaaaaa
tacatgaaagaactaaagcccacagtttttaatgatttaattgccatgaatgccttgtat
cgcccaggacctattgcttatataccaagttttattaaacgaaaaaatggcgaagaacct
atagaatacgaccttgaagcctgcgaagaattactaaaagacacatacggaatcaccgtt
taccaagaacaagtaatgcttttatcacaaagactagccgatttttctaaaggtgatgcc
gacgttttgcgtaaagccatggggaaaaaacaacgtgatgtcctagacaaaatgaaacct
aaatttgtcagtcaggctgtcgccaaaggccatgccgaagacaaactagaaaaaatatgg
aaagactgggaagcctttgccgaatatgcgtttaacaaatcgcactctacttgttatgcg
tggattgcctaccaaaccgcctacctaaaagccaattatccagccgaatatatggcggca
gttttgtctaataacatgagcgatattaagcaagtttcgttttttatggaagaatgcaaa
cgcatgggattagccgttttgggcccagacgtaaacgaatcattttacaaatttacggtc
aatgatgattatgccgttcgtttcggaataggcgctgtaaaaggtgtgggaatgggcgcc
gtaaataccattgtcgaaaacagaaaagacggaagttacaaatctattttcgatttagcc
aagcgtgtcgatcagcgtgctgctaacaaaaaagccatcgaaaaccttattctcgcaggt
ggcttcgattgttttgaaaacacacatagggcacaatattttcataccgatggcgataat
ttaactttctacgaaaaagccatacgatttggcgctaaatttcaagaaaacgaaaattcg
tcgcaagtcagtttgtttggagacacgagcgatgtgcaaatttctgaacctctaatacca
ccctgtgaagagtggaatacgatggaaaaactagccaaagaaaaagaagttgttgggata
tatatttcaggccatcccttagatgattacaagttcgagatgaaatatttttgcaacaac
aaactcgaatctctaaaaaatctagaacaattcgtgggcaaaaaccttgcatttggaggt
attgtaaccaatgtacaacacagaactgctaaaaacggaaaaggctgggcaacctttgtt
ttagaaggatatgatgagaataatgagttcagaatttttaatgaagaatacctaaaattc
agacattttctagtacaaaatcagtttgtgtatatccgagttaatataaaagacggttgg
gtaaatcgggatacaggtaaaaaatcggatccgcaaattaactttctgcaagtagaatct
atacaagatgtcttgcgaatttttgcaaaaaaattagtcattcacttagatataaacgtt
ttgcaagaagagttagtttctcaattgattactatttttgatgcgaataaaggagataat
actgtatcttttgatattttagaattagaacgaattaaaaaacaaattgaagcagtacct
ctagaagccaatgatatagaagttgcattagacgaaaatggagacattcaagaatctgaa
aatccagaaccaacaattactaccgaagtcgaagaaacaaaaataattaataaaatttct
atgaacagccgcaaactgaaaattaaaatctcaaacgaattactaaatgaattagaagga
ttacaaattaattttaagttaaattaa
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