Flavobacterium psychrophilum V4-24: IA04_03980
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Entry
IA04_03980 CDS
T03660
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fpw
Flavobacterium psychrophilum V4-24
Pathway
fpw03420
Nucleotide excision repair
fpw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IA04_03980
03430 Mismatch repair
IA04_03980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpw03400
]
IA04_03980
Enzymes [BR:
fpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IA04_03980
DNA repair and recombination proteins [BR:
fpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IA04_03980
MMR (mismatch excision repair)
Other MMR factors
IA04_03980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
ResIII
DEAD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AIG36490
UniProt:
A0A076P2T7
LinkDB
All DBs
Position
877715..880048
Genome browser
AA seq
777 aa
AA seq
DB search
MQKYISQLNEAQQAPVLQKDGPMIVIAGAGSGKTRVLTVRIANLMSQNVDAFNILALTFT
NKAAREMKKRIADIVGNAEAKNLWMGTFHSVFARILRSEADKLGYPSNFTIYDAQDSVRL
LGAIIKEMQLDKDIYKPKQVFSKISSYKNSLVTVKAYFNNPELQESDAMAKKPRLGEIYQ
QYVERCFKAGAMDFDDLLLKTNELLTRFPEVLLKYQDRFRYILVDEYQDTNHSQYLIVRA
LSDRFQNICVVGDDAQSIYGFRGANINNILNFQKDYENVKMFRLEQNYRSSKNIVEAANS
VIDKNKTKLDKVVWTANDFGQKIKVNRSVTDNDEGRFVAGEIWTQKMTNQMTNGQFAILY
RTNAQSRAMEDALRKRDIPYRIYGGLSFYQRKEIKDVLCYLRLVINPKDEEALIRVINYP
ARGIGDTTIEKLTIAANHYKRSIFEVMQVIDKIDLKLNSGTKAKLQDFVTMIKSFQAINE
TQDAFYLADHVAKKTGYIQELKKDGTPEGIARIENIEELLNGIKDFTDGQVEVDGARGAL
SEFLEDVALATDLDKDTSDDDRVALMTIHLAKGLEFPTVFVVGMEEDLFPSAMSMSTRSE
LEEERRLFYVALTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIEEINGEYLEYITPPETNY
RYKPQIDHDIFGDVDKSKLRLAKPITGTPPKYIANNEPKLDTNIRKLKPLSNNAGSSSPN
LFDNKLVAGNIVMHERFGKGEILNLEGVGADKKAEIKFEVGGIKKLLLRFAKLDVMG
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatacatcagccaacttaacgaagcacaacaagcccctgttttacaaaaagac
ggaccaatgattgttattgctggagcaggctcaggaaaaacacgtgtacttacagtaaga
atagctaatttaatgagtcaaaatgttgatgcttttaatattcttgcactcacatttacc
aataaagcagcacgtgaaatgaaaaaacgtattgcagatattgtaggaaatgccgaagct
aaaaacctctggatgggaacttttcactccgtttttgctcgaattcttcgttcggaggca
gataaattgggttacccttcaaattttaccatttatgatgcacaagattccgtacgattg
ctaggagcgatcatcaaagaaatgcaattagacaaagatatttacaagccaaaacaagtc
tttagtaaaatatcatcttacaaaaatagtttagtcacggtaaaagcctattttaataat
ccagaattgcaagaatctgatgcgatggcaaaaaaaccccgcttgggcgaaatttatcag
caatatgtagaaaggtgttttaaagcaggtgccatggattttgatgatttgttgctaaaa
accaacgaattactcacacgattccctgaagttctcctgaaatatcaggatcgtttccga
tacattttagtcgatgagtaccaagatacaaaccactcacagtatttaattgttcgtgcc
ttgtccgatagatttcaaaatatttgtgtcgtgggcgacgatgcccaaagtatttatggt
tttcgtggagccaacattaacaatattttaaattttcaaaaagattacgaaaacgtaaaa
atgtttcgattggaacaaaattatcgttcgtcaaaaaatattgtcgaagcagcgaattct
gttatcgataaaaataaaacaaaactcgacaaagtcgtctggacagccaacgattttggt
caaaaaataaaagtaaaccgaagcgtaaccgacaatgatgaaggtcgttttgtagcagga
gaaatctggacacaaaaaatgaccaaccaaatgacaaacggtcagtttgctatcttgtat
cgtaccaatgcacaatctcgtgctatggaagacgctttaagaaaacgtgacattccttac
agaatttatggcggattatccttctatcagagaaaagaaataaaagatgttttgtgttat
ttgcggttggttattaatccaaaagacgaagaagcactcattcgtgttattaattatcca
gcacgaggaataggagatacgaccatcgaaaaactaaccattgcagccaatcattacaag
cgttcaatttttgaggtaatgcaagttattgataaaatcgatttaaaattaaattctgga
accaaagcaaaattacaagattttgtaacaatgataaaaagttttcaggctattaatgaa
actcaagatgctttttaccttgccgatcatgtagccaaaaaaacaggatatattcaagaa
ctcaaaaaagatggcacgccagagggtattgcccgaattgaaaatatagaagaattacta
aacggaattaaggattttaccgatggccaagtagaagtagatggtgctcgtggtgcatta
tccgaatttttagaagatgtggcactagctaccgatctagacaaagacacctccgatgat
gatcgtgttgctctaatgaccattcaccttgcaaaaggtttagaatttcccacggttttt
gttgtaggcatggaagaagatttgtttccaagcgccatgagtatgagcaccagaagcgaa
ctcgaagaagaacgccgattgttttatgtagccttaacccgagcagaacaccaagcgtat
ttaacctacgcacaatctcgttaccgctggggaaaacttacagatagcgaaccatcacga
tttatcgaagaaataaatggcgaatatttagagtatatcacaccgcccgaaacaaattat
aggtacaaaccacaaatagatcatgatatttttggtgacgtagataaatcgaaattacga
ttagcaaaacctataacaggtacgccacccaaatatattgcaaacaacgaacccaaatta
gatacaaatattcgcaagctaaaacctctttcgaataacgcaggatctagcagccctaat
ttatttgacaacaaactcgttgcaggaaatatagtcatgcacgaacgtttcggaaaagga
gaaatcttaaacctagaaggcgttggtgccgacaaaaaagccgaaattaaatttgaagta
ggcggaattaaaaagttgttattacgttttgcaaagttagatgtaatggggtaa
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