Flavobacterium psychrophilum V4-24: IA04_04020
Help
Entry
IA04_04020 CDS
T03660
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpw
Flavobacterium psychrophilum V4-24
Pathway
fpw03410
Base excision repair
fpw03430
Mismatch repair
fpw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IA04_04020
03430 Mismatch repair
IA04_04020
03440 Homologous recombination
IA04_04020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpw03400
]
IA04_04020
DNA repair and recombination proteins [BR:
fpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
IA04_04020
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IA04_04020
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IA04_04020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Trigger_C
Motif
Other DBs
NCBI-ProteinID:
AIG36497
LinkDB
All DBs
Position
888045..889733
Genome browser
AA seq
562 aa
AA seq
DB search
MRWTIKPKPAEEKVKHLVEVLNIKDFVASLLIQRGIETYDQAKTFFRPSLDDLHNPFLMK
DMDKAVRRIEKAIANNENIMVFGDYDVDGTTAVSLVSSYLKSYYKNVATYIPDRYDEGYG
ISYKGIDYADDNNITLIIALDCGIKSVEHVAYAKAKNIDFIICDHHRPGVFLPEAVAVLD
PKRPDCFYPYDELCGCGVGFKLIQALGENRNQTITDFIPYLDLVATAIAADIVPITGENR
VLAKFGLEVINTNPRPGIKALIQNIKKETLTITDVVFIIAPRINAAGRIKHGNYAVQLLT
EFNLPQAEEFATQIEIFNADRKDLDKQITKEALQQIENNKEENNFTTVVYQEDWHKGVIG
IVASRLIETHYKPTIVFTKSGDKLAASARSVKDFDVYNALEESAAFLEQFGGHMYAAGMT
LKEENYKKFKNKFEEVVKNSIQPDLLIPEIAIDAELKLSDINEKLVRILKQFEPFGPENM
TPVFISKNINDTGYAKTLGKDEEHLRLFVKQNNSEGFAAIGFNLANKKALTENQKPFDAV
YYIDENIWNGNVTLQLRLRDIN
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggacaattaagccaaaacctgctgaagaaaaagtgaaacatctggtagaagtg
ctaaatattaaagattttgtagcttcattgctaattcaacgcggaattgagacatacgac
caagccaaaacattttttcgtcctagtttagatgatttgcacaatccatttttaatgaaa
gatatggataaagccgttcgacgaatagagaaggcgattgcaaataacgaaaatatcatg
gtttttggagattatgatgttgacggaacaaccgcagtttcattagtttcgtcttactta
aaatcctattacaaaaatgtagccacttatattcctgatcgttacgatgaaggttacgga
atctcatataaaggtatcgattatgccgatgataataatatcacacttattattgcacta
gattgtggcataaaatcggtagagcatgtggcttatgccaaagcaaaaaacatcgatttt
attatttgcgaccaccaccgtccaggagtgtttttgccagaagcagttgctgttttagac
cctaaacgacccgattgcttttatccttacgacgaactttgtggttgcggggttggcttt
aaattaatacaagctttgggtgaaaaccgaaaccaaaccatcacagattttattccgtat
ctagacttggttgccactgcaattgctgccgatattgtacctataactggtgaaaataga
gttttagcaaaatttggcttagaagtaattaatacaaatcctagaccaggaattaaggct
ttaatacaaaatattaaaaaagaaacactcacaattaccgatgtcgtttttatcattgca
ccaagaataaatgctgcgggacgaataaaacatggtaattatgctgttcaattattaaca
gaatttaatttgccacaagcagaagaatttgccacacaaatagaaatttttaatgctgac
agaaaagatttagacaaacaaatcaccaaagaagcattgcaacaaatagaaaataataaa
gaagaaaataactttacaactgttgtttaccaagaagattggcacaaaggagttatagga
attgtagcctctagactcatagaaacacattataaaccaacaattgtttttacaaaaagc
ggcgataaattagcagcttcggcacgttctgttaaagattttgatgtttataacgctcta
gaagaaagtgcagcattcctagaacagtttggcgggcacatgtatgccgcagggatgact
ctaaaagaagaaaattataaaaaatttaaaaataaatttgaagaagttgttaaaaatagt
attcagccagatttgcttattccagaaattgctattgatgccgaacttaaattatccgat
ataaatgaaaaattagtccgtattttaaagcaattcgaaccctttggtccagaaaatatg
actcctgtttttatatcaaaaaatataaacgatacgggttatgctaaaactcttggtaaa
gacgaagagcatttgcgattgtttgtaaaacaaaataatagtgaaggatttgctgctatt
ggttttaatttagccaataaaaaagcacttacagaaaatcagaaaccatttgatgcagta
tattatattgatgaaaatatttggaatggaaatgtaactttgcaattaagactacgagat
ataaactaa
DBGET
integrated database retrieval system
