Flavobacterium psychrophilum V4-24: IA04_05505
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Entry
IA04_05505 CDS
T03660
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpw
Flavobacterium psychrophilum V4-24
Pathway
fpw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IA04_05505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpw03021
]
IA04_05505
03400 DNA repair and recombination proteins [BR:
fpw03400
]
IA04_05505
Enzymes [BR:
fpw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IA04_05505
Transcription machinery [BR:
fpw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IA04_05505
DNA repair and recombination proteins [BR:
fpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IA04_05505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AIG36766
LinkDB
All DBs
Position
complement(1213302..1217618)
Genome browser
AA seq
1438 aa
AA seq
DB search
MMENRNNNNNRDKNPVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFC
ERIFGPVKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFR
SLPNKIGYILGLPSKKLDMIIYYERYVVIQAGIAQNAEGESIKRLDFLTEEEYLNILDTL
PADNQYLDDFDPNKFVAKMGAECIMDLLARINLDELSYDLRHKANNETSKQRKTEALKRL
QVVESFRESNKNRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNN
RLKRLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGR
FRQNLLGKRVDYSARSVIVVGPELRLFECGIPKDMAAELYKPFVIRKLIERGIVKTVKSA
KKIIDKKEPVVWDILENVIKGHPILLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAF
NADFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKER
LTTEGHIILGQDLVFYSAEETNIALNEGRVELNARVKIRAKDFNEEGELVYKIIQTTAGR
VLFNEVVPEAAGYINDVLTKKNLRDIIGKILAVTDVPTTAAFLDNIKDMGYKFAFKGGLS
FSLGDIRIPEQKTQLIADARAQVEGISGNYNMGLITNNERYNQVIDIWTSANAQLTELAM
KNIREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNF
KEGLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIEDCGTLRGVEVS
ALKKNEEIVESLGERILGRVVLQDVVNPLTNDILVHAGEQITEAIMKVIENSPVEKVEVR
SPLVCEATKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGG
ISEESNILAKFAGRLEIEDLKTVKGEDGEGNLVDIVISRSTEMKLIDQKTGILLATNNIP
YGSSIYVNDAQVVEKGDVICKWDPYNGVIVSEFTGKIAYEDLEQGQSFMVEIDEQTGFQE
KVISEGRNKKLIPTLLVYGKNDELIRSYNLPVGAHLMVNDGEKIKAGKILVKIPRRSSKT
GDITGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEIKKYLVKL
SSQILVQENDFVRAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKH
FEVVIRQMMRKVRVQDPGDTLFLEDQLIHTKDFIVENDKLYGMKVVEDSGDSSNLKAGQI
ITPRELRDENSLLKRTDKNLVIARDVITATATPVLQGITRASLQTKSFISAASFQETTKV
LNEAAVAGKIDYLEGLKENVIVGHRIPAGTGMREYDHTIVGSKEEYNDLMVAKEEFNY
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaatagaaacaataataataacagagacaagaatccagttaaaagattcaat
aaaatctctataggattagcttcaccagaatctatcttggcagagtcaagaggagaggtg
ttaaagccggaaactatcaactatagaacgcacaagccagaacgtgatggtcttttctgt
gaacgaattttcggaccagtaaaagatttcgaatgtgcttgtggaaaatacaaaagaatc
cgatacaaaggaatcgtttgtgaccgttgtggtgtagaagtcactgagaaaaaagtacgt
cgtgatagagtaggacacattaatcttgttgtgccaatcgctcatatctggtatttccgt
tcacttccaaacaaaattgggtacattcttggattgccatctaagaaattagatatgatt
atttactacgaaagatatgtagtaattcaagcgggtattgctcaaaatgctgaaggagaa
tctatcaaaagattagatttcttaacagaagaagagtacttaaatattcttgatactctt
ccagctgataaccaatatttagatgattttgatcctaataaatttgttgccaaaatggga
gcagagtgtattatggacttattagcacgtatcaatctagacgaattgtcttacgatttg
agacacaaagcaaataacgaaacatctaagcaaagaaaaacagaagccttaaaaagactt
caagtggttgaatctttccgtgagtctaacaagaacagagagaatcgtcctgaatggatg
attatgaaagtggttcctgttatcccaccagaattacgcccgcttgtaccactagacggt
ggtcgttttgcaacttcagatttaaatgacttataccgtcgtgtaattatacgtaacaac
cgtctaaaaagattaatggaaattaaagctccagaagtaatcttaagaaacgaaaaacgt
atgttgcaggaatcagtagattcacttttcgataatactcgtaaagcttctgctgtaaaa
acggaatctaacagaccgttaaaatccctttctgattccttaaaaggaaaacaaggtcgt
ttccgtcaaaacttactaggaaaacgtgtcgattattctgctcgttcggtaattgttgtt
ggacctgaattaagattattcgaatgtggtatcccaaaagatatggcggccgaattatac
aaaccattcgttatccgtaaattgatagagcgtggaattgtaaaaacagtaaaatctgca
aaaaaaataatagacaaaaaagaaccagtagtttgggatattcttgaaaatgtaattaaa
ggacacccaatattactaaatcgtgcccctactttgcacagattaggtattcaagcattt
caacctaaattaattgaaggaaaagcaatacaattgcaccctttagtttgtacagctttt
aatgccgatttcgatggagatcagatggcagttcacttgccacttggaccagaggctatt
ctagaagcacaattgttaatgttggcttcacacaatatcttaaatccagcaaatggtgcg
ccagttactgtaccttctcaagacatggtacttggtctgtattacatgaccaaggaacgt
ttaacaaccgaaggacacattattctaggacaagatttagttttctattctgccgaagaa
acaaatattgcgctcaacgaaggacgagtagaactaaatgctcgtgttaaaattcgtgct
aaagatttcaacgaagaaggagaattagtatataaaattatacaaaccactgccggtcgt
gtattatttaatgaagtagtaccagaagcagcaggttatataaatgacgtattaactaag
aaaaacttacgtgatattattgggaaaatccttgcagtaacagatgttcctacaacggca
gctttccttgataacattaaagatatgggttataaatttgccttcaaaggtggattatca
ttctctcttggtgatattagaattccagaacaaaaaacacagcttattgccgatgcaaga
gcacaagtagaaggaatttctggaaactataacatgggtcttattaccaataacgaacgt
tacaaccaagttattgatatctggacttctgcaaatgcacagcttacagaacttgcaatg
aaaaatatccgtgaagaccaacaaggtttcaactcggtatatatgatgcttgactctggt
gcaaggggatctaaagaacaaattcgtcagttaactggtatgcgtggtttgatggctaag
cctaaaaaatctactgctggtggtggtgaaattatcgaaaacccaattctttctaacttt
aaagaaggtctttctatccttgagtactttatttctactcacggtgcgcgtaaaggactt
gcagatacagcacttaaaacggccgatgcgggttacttaacacgtagattacatgacgta
tctcaagacgtaattgtaaacatcgaagactgtggtactttaagaggtgtagaagtttct
gcattaaagaaaaatgaagaaattgttgaatcattaggagaaagaattttaggacgtgtt
gtgttacaagacgtagtaaatcctttaaccaacgatatattagtgcatgcaggtgagcaa
atcaccgaagcaataatgaaagttatcgaaaactctccagtagagaaagtagaagtacgc
tcgccacttgtttgcgaagctactaaaggaatttgtgctaaatgttacggacgtaacttg
gctactggaaaaatgacccaaagaggtgaagcagttggagtaattgcagcacaatctatt
ggagaaccaggaacacagcttacacttcgtactttccacgttggaggggttgcgggtggt
atttctgaagaatctaacattcttgcaaaatttgcaggacgtttagaaattgaagattta
aaaactgtaaaaggtgaagatggagaaggtaatttagttgatattgtaatttctcgttct
acagaaatgaaattaatcgaccaaaaaacgggtattcttcttgctacaaataatattcct
tacggttcaagtatttatgtaaatgacgctcaagttgtagaaaaaggagatgttatttgt
aaatgggatccatataatggagttatcgtttctgagtttaccggaaaaattgcttacgaa
gatttagaacaaggacaatcgtttatggtcgaaatcgatgagcaaactggtttccaagaa
aaagtaatttctgaaggaagaaataaaaaattaatccctactttattagtgtatggtaaa
aatgacgaactaattcgttcgtacaacttaccagtaggagcccaccttatggtaaatgat
ggtgagaaaattaaagcaggtaagattttagtaaaaataccacgtcgttcctcaaaaact
ggcgatattacaggaggtttaccaagaattaccgagttgttagaagctcgtaatccttca
aacccagcagtagtttcagaaattgatggtgttgtatcttttggaaaaattaaaagaggt
aaccgtgagattgttatcgaatctaaatttggtgaaatcaagaaatacctagttaaatta
tctagtcaaattctagttcaagaaaatgacttcgtaagagcaggtgttcctttatctgat
ggtgccattacaccagacgatatcttaagaattcaaggaccagctgctgtacaacagtat
ttggttaatgagattcaagaagtttaccgtttgcaaggggtaaaaattaacgacaaacac
tttgaggtagtaatacgtcaaatgatgcgtaaagtaagagttcaggatccaggagataca
ttgttcttagaagatcaattaattcatactaaggattttatcgtagaaaacgataaatta
tacggtatgaaagtagtggaagattcaggagattctagtaacttaaaagcaggacaaatt
atcacgcctcgtgagttacgtgatgaaaactcattgttgaaacgtaccgataaaaattta
gttatagctcgtgatgttattacagcaacagcaactccagtattgcaaggtattactaga
gcatcgctacaaactaaatcgtttatctctgcggcttctttccaagaaacaacaaaagta
cttaatgaagctgccgttgcaggtaaaatagattacttagaaggtcttaaagaaaatgta
attgtaggacacagaatcccagccggtacaggtatgagagaatatgaccatacaattgta
gggtctaaagaagaatacaatgatttgatggttgcaaaagaagaattcaattattaa
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