Flavobacterium psychrophilum V4-24: IA04_09980
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Entry
IA04_09980 CDS
T03660
Name
(GenBank) deoxyribodipyrimidine photolyase
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
fpw
Flavobacterium psychrophilum V4-24
Brite
KEGG Orthology (KO) [BR:
fpw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpw03400
]
IA04_09980
Enzymes [BR:
fpw01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
IA04_09980
DNA repair and recombination proteins [BR:
fpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
IA04_09980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
AIG37583
LinkDB
All DBs
Position
2148894..2150429
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AA seq
511 aa
AA seq
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MLKTLRLILGDQLNINHSWFQTNDDSITYVIMEIRSETDYATHHIQKIAGFFSAMRNFAS
ELKEKKHNSIYFHLNDTNNLQAFDKNLQQLINKEHYTHFEYQLPDEYRLDELLKNFCQTL
SISTSVADSEHFMSTREELGNFFDGKKTFLMESFYHMMRKKHNVLMQGNKPLTGKWNYDG
ENRKKLPKNHKPTSPLGFNNDVSEIVAEIHKSNIKTIGNIDAKNFVWPTTRTQSSKLLDF
FVTECLTLFGSYQDAMTPNQWSLYHSRISFSMNVKLISPLEVINRAIQEWESRPDQIAYN
QLEGFVRQIIGWREYMRGIYWNKMPQYATMNYFENQNKLPQWFWTGKTKMNCLKDTINQS
LNFAYAHHIQRLMITGNFALLAGVNPDEVDAWYLGIYIDAIQWVEITNTRGMSQFADGGI
VGTKPYVSAASYIDKMSHYCGSCFYKKSIKTGDKACPFNSLYWNFYDKNQDKLSKNPRIG
MMYNMWQKMKPDDKVALLQQADYYLKNINKL
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaactttacgattaattctcggcgatcaattaaatataaatcattcttggttt
caaactaacgatgattcgattacttatgtcataatggaaattcgttctgaaaccgattat
gccacacatcatattcaaaaaatagctggttttttttccgctatgcgaaattttgcttcc
gaattaaaagagaaaaaacacaacagcatttatttccatttaaacgacacgaataattta
caagcctttgacaaaaacctacaacaacttattaataaagaacactatacccatttcgaa
taccaattaccagatgaatatcgtttagatgaattgctaaaaaacttttgtcaaacactt
tctatttcaacttctgtagcagattcagaacattttatgagcactcgagaagaattaggc
aatttttttgatggtaaaaaaacatttttgatggaaagtttctatcacatgatgcgaaaa
aaacacaatgttttaatgcaaggtaacaaaccattaacaggaaaatggaattatgacggc
gaaaacagaaaaaaattacccaaaaaccataaaccaacatcgccattaggttttaacaat
gatgtttcagaaattgtggctgaaattcataaaagcaatatcaaaactattggaaatatt
gacgcaaaaaactttgtttggcctaccaccagaacacaatcttcaaaattattagacttt
tttgttacagaatgtttaactcttttcggaagttatcaagatgcaatgacacccaaccaa
tggtcactttatcattccagaatttctttttcgatgaatgtaaaattaatttctccgcta
gaagtcatcaatagagccattcaagaatgggaaagtcgacctgaccaaattgcatacaat
caattagaaggattcgtgagacaaataattggctggcgagaatacatgagaggcatatat
tggaacaaaatgccacaatatgccacaatgaattattttgagaatcaaaataaattaccc
caatggttttggacaggaaaaacaaaaatgaattgcctaaaagacaccataaatcaatcc
ttaaattttgcctacgcacatcatattcaacgattgatgattacaggaaattttgcactt
ttagctggagtaaatcctgatgaagtagatgcttggtatttgggaatttatattgatgct
atacaatgggtcgaaatcaccaatacaagaggcatgagtcagtttgccgatggcggaatt
gtaggtacaaaaccgtatgtgagtgctgcttcatacatagataaaatgagtcattattgt
ggaagctgtttctataaaaaatcgataaaaactggcgataaagcctgccctttcaatagt
ttgtattggaatttttatgataaaaaccaagacaaactaagcaaaaaccctcgaattgga
atgatgtacaatatgtggcaaaaaatgaaacctgatgacaaagtagcgttgctacaacaa
gccgattattatttaaaaaacattaataaattatga
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