Flavobacterium psychrophilum V4-24: IA04_10005
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Entry
IA04_10005 CDS
T03660
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fpw
Flavobacterium psychrophilum V4-24
Pathway
fpw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IA04_10005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpw03019
]
IA04_10005
03016 Transfer RNA biogenesis [BR:
fpw03016
]
IA04_10005
Enzymes [BR:
fpw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IA04_10005
Messenger RNA biogenesis [BR:
fpw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IA04_10005
Transfer RNA biogenesis [BR:
fpw03016
]
Prokaryotic type
tRNA degradation factors
IA04_10005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
Tipalpha
Motif
Other DBs
NCBI-ProteinID:
AIG37587
UniProt:
A0A076NR50
LinkDB
All DBs
Position
2153757..2155892
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AA seq
711 aa
AA seq
DB search
MIPQLFVESIDLGDGRNITIETGRLAKQADGSVVVRIGKTVILGTVVSSRKATPGIDFLP
LTVDYREKFAAAGRFPGGFFKREARPSDSEVLTMRLVDRVLRPLFPSDYHAEVQVMIQLM
SHDEEVMPDALAGLAASAALALSDIPFETLISEARVGRIDGKFIINPSRAQLELSDIDMM
IGASTDSIAMVEGEMKEISEAEMLEAIKFAHEHIKVQIAAQERLAAAFGKKEVRTYEKEK
SDDAIYAKVKEAAYDKIYNIAKVGSAKQERTAAFDAVKEEVKALFTEEELAENGDLVSKY
FYKTNKEAVRNVTLDLGTRLDGRKTTEIRPIWCEVDYLPSVHGSALFTRGETQALATATL
GTSREANQIDSPSQQGEEKFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMIP
ADCPYTIRVVSEVLESNGSSSMATVCAGTLSLMDAGIQMIRPVSGIAMGLITDGERFAVL
SDILGDEDHLGDMDFKVTGTSEGITACQMDIKIDGLKYEIMEAALAQARDGRLHILNILT
ETLATPKVDVKAYAPKIIMRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEMGVV
EILGTDPAGIEAVLAKIESITFKPQIGEAYEVKVIKMLDFGAVVEYTAVPGNEVLLHVSE
LAWERTENVTDVVNMGDVFMVKYLGLDPKTRKEKVSRKALLPRPPREEKKE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgattccacaattatttgtagaaagtatcgatttaggtgatggcagaaacatcacaatc
gagacaggtcgtttagccaaacaagcagacggttctgtagtagtaagaattggtaaaact
gtaatcttaggaacagttgtatcatcaagaaaagcaactccagggatcgatttcttgcca
cttacggtagattatcgcgaaaaatttgcagctgctggtcgttttccaggaggattcttt
aagagagaagcacgtccaagtgatagcgaagtattaacaatgagattagttgaccgtgtt
ttgcgtccactattcccatcagattaccatgcagaagtgcaagtcatgattcagttaatg
tctcatgacgaagaagtaatgccagatgccttagcaggattagccgcatcagcagcactt
gccttatctgacatccctttcgaaactttaatttctgaagcaagagtaggaagaatagac
ggtaaatttatcatcaatccatctcgtgcacaattagaattatcagatattgatatgatg
attggagcatctacagattctatcgccatggtagaaggagaaatgaaagaaatctctgaa
gcagaaatgttagaagccattaaatttgctcacgaacacattaaagtacaaattgcagca
caagaaagattagcagccgcttttggaaaaaaagaagttcgtacctacgaaaaagaaaaa
tccgacgatgctatatatgccaaagtaaaagaagcagcttacgataaaatttacaacatt
gcaaaagtaggttccgcaaaacaagaacgtaccgctgcgtttgatgctgtaaaagaagaa
gtaaaagcattatttacagaagaagaattagcagaaaacggagacttagtttctaaatat
ttctacaaaacgaacaaagaagccgttcgtaatgtaactttagatttaggaactcgcctt
gacggaagaaaaaccaccgaaattcgtccaatttggtgcgaagtagattatttaccatca
gtacacggatcagcattatttactcgtggcgaaactcaagcattagcaacagcaacttta
ggaacctctagagaagcaaaccaaatcgattcgccatcacaacaaggagaagaaaaattc
tatttacactataattttccaccattttctacaggagaagcccgtccgttaagaggaaca
tcaagaagagaagttggtcacggaaacttggcgcaaagagccttaaaaaatatgataccc
gcagattgtccttacacaatccgtgtagtttctgaagtattagaatctaacggttcatct
tcaatggctaccgtttgtgctggaactttatccttaatggatgctggtattcaaatgatt
cgtccagtctctggaattgccatgggattaattaccgatggagaacgttttgcagtatta
tcagatattctaggtgatgaagaccatttaggagatatggattttaaagtaactggaacc
tcagaaggaattacagcttgccaaatggacattaaaattgatggattaaaatacgaaatc
atggaagcggcattagcacaagctagagatggtcgtttgcatattcttaatattttaact
gaaactttagcaacaccaaaagttgatgttaaagcgtatgcgccaaaaatcatcatgaga
accattcctggtaactttattggtgccttaattggacccggaggaaaagtgattcaagaa
ttacaaaaagccaccggaacaaccatcgtaattaacgaagttgacgaaatgggagttgtt
gaaatccttggtacagaccctgccggaatcgaagctgtattggctaaaatagagtcaatt
actttcaaaccgcaaataggagaagcatacgaagtaaaagtaattaaaatgctagatttt
ggtgcagtggtagaatatacagccgttcctggaaacgaagtattattacacgtatctgag
cttgcttgggaaagaacagaaaatgtgaccgatgttgtaaacatgggtgatgtatttatg
gtgaaatatttaggtttagatcctaaaactcgcaaagagaaagtatctagaaaagcctta
ttaccaagacctccacgtgaggagaaaaaagagtaa
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