Flavobacterium psychrophilum FPG101: FPG101_07960
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Entry
FPG101_07960 CDS
T03281
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fpy
Flavobacterium psychrophilum FPG101
Pathway
fpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPG101_07960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpy03021
]
FPG101_07960
03019 Messenger RNA biogenesis [BR:
fpy03019
]
FPG101_07960
Transcription machinery [BR:
fpy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FPG101_07960
Messenger RNA biogenesis [BR:
fpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FPG101_07960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
NACHT
AAA
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AIN71833
LinkDB
All DBs
Position
complement(1731277..1733028)
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AA seq
583 aa
AA seq
DB search
MFDISVLKEMKLPELQEIAKVAKIAKFKTLKKDELVYQILDYQAANPEKIAPIATETISV
IDEKPKRARVVEAKEAKPIVSKKVIAKPPVQQEVITFEEPKAQTTPELEKPVVEAIQKQR
APKVIRFTKDENNVTKVDNSHRNKKIVKPVIVPANTEEGVSEILENPETVQKEKSSNPNQ
NQKKPQERKRADEVNQNPNAKNKNNFREPDYEFEGIIESEGVLEMMPDGYGFLRSSDYNY
LASPDDIYLSTSQVRLFGLKTGDTVKGVVRPPKEGEKYFPLVRVLKINGHDPQVVRDRVS
FEHLTPIFPTEKFRLAEKGSSISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKEIANAI
AANHPEVYLIVLLIDERPEEVTDMQRSVRGEVVASTFDREPQEHVKIANIVLEKAKRLVE
CGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNVENGGSLSI
IATALTETGSKMDEVIFEEFKGTGNMELQLDRKIANRRIFPAIDLTSSSTRRDDLLLDEK
TIQRMWIMRKYLADMNPVEAMEFINDRFKKTRNNEEFLISMND
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatttctgttttaaaagaaatgaagctccctgagctacaagaaattgcaaaa
gttgctaaaattgcaaaattcaagacgttaaaaaaagacgaacttgtttaccaaatatta
gattaccaagctgcaaaccccgaaaaaattgctccaattgcaaccgaaactatttctgta
atagatgaaaagccaaaaagagctagggttgtagaggctaaagaagcaaaaccaattgtt
tcaaaaaaggtaattgcaaagccaccagttcagcaagaagtaattacttttgaagagcct
aaagcccaaacaactccagaattagaaaaaccagttgttgaagccatacaaaagcaacgt
gcgccaaaagtaattcgatttacaaaagacgaaaataatgtgactaaggttgataattca
catcgaaataaaaaaatagtaaaacctgtaattgtccctgcaaatacagaagaaggagtt
tctgaaattttagaaaatccagaaacggttcaaaaagaaaagtcttcaaatccgaatcaa
aatcagaaaaagccacaagagcgaaagcgagctgacgaagtaaaccaaaatccaaatgca
aaaaacaaaaataattttagagagccagattatgagttcgaaggaattatagaaagcgaa
ggtgtactagaaatgatgccagacggttatggttttttgcgttcttcagattataattat
ttagcctcaccagatgatatttatttatcgacctcgcaagttcgattatttggtttaaaa
acaggagatactgtaaaaggcgtagttcgtccgccaaaagaaggcgaaaaatatttccct
ttagtaagagtactaaaaataaacggacatgatccgcaagtggttagagacagagtttct
ttcgagcacttgaccccaatattcccaacagaaaaatttcgcttggccgaaaaaggaagt
tcaatttctactcgtattatcgatttgttttctccaataggaaaaggacaacgtggtatg
atagtcgcacagccaaaaacaggtaaaacgatgttgcttaaagagattgctaatgctatt
gcagccaatcatccagaagtatatttaattgttttattaatagacgaacgcccagaagaa
gttacagatatgcaacgtagtgtgcgtggcgaagtagtagcttctacctttgatagagag
ccgcaagaacacgtaaaaattgccaatattgtgctagaaaaagcaaaacgtttggtcgaa
tgtggtcatgatgtagtcatactattagattcgattacacgtttggcaagagcttataat
actgtgcaaccagcttctggaaaagtattaagtggtggtgtagatgccaatgcgttgcaa
aaaccaaaacgttttttcggagcagctcgtaatgtagaaaacggtggctcgttaagtatt
attgcaacagcacttacagaaacgggttctaaaatggacgaagttattttcgaagaattt
aaaggaactggtaatatggaattgcaattggatcgtaaaattgcaaaccgtcgtattttt
ccagcaatagatttaacatcatctagtacacgtcgtgatgatttattactcgacgaaaaa
acaatacaacgcatgtggattatgcgtaaataccttgcagatatgaatcctgtagaagct
atggaatttataaatgaccgatttaagaaaacaagaaataacgaagaatttttaatttcg
atgaatgattag
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