Francisella philomiragia GA01-2794: LA55_1620
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Entry
LA55_1620 CDS
T03620
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fpz
Francisella philomiragia GA01-2794
Pathway
fpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA55_1620 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpz03021
]
LA55_1620 (rho)
03019 Messenger RNA biogenesis [BR:
fpz03019
]
LA55_1620 (rho)
Transcription machinery [BR:
fpz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LA55_1620 (rho)
Messenger RNA biogenesis [BR:
fpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LA55_1620 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA
ResIII
S1CSD-TOTE-2
AAA_22
DUF3086
Motif
Other DBs
NCBI-ProteinID:
AJI52666
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All DBs
Position
1643048..1644310
Genome browser
AA seq
420 aa
AA seq
DB search
MNLNELKYKSVNELMDIAQSLDLESLRARKQELIFSILKYHADKGEDIYGEGILEVLQDG
YGFLRSSDSSYFASPDDIYVSPAFIRKLNLRTGDSIVGKIRPPRDNEKYFAVKHIDSVNF
DSPELARKKILFENLTPEYAKERLTMEIGNGSSEDITARVIDLAAPFGKGQRGLIVAPPK
TGKTIMMQNIATSIAKNHPECNLIMLLIDERPEEVTEMQRSVRGEVVASTFDEPAARHVQ
LAEIVIEKAKRLVEHKQDVVILLDSITRLARAYNTVSPASGRVLSGGVEANALQKPKRFF
GAARNTAEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELHLDRKIAERRVFPAISFD
RSGTRREELLTTPEELQKLWVLRKILGGMEDVQAMEFLTEKMKGSLTNEEFFETMKRGAI
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaatgaattaaagtataaatctgttaatgagctaatggatatagctcaaagt
ctagatcttgaatcacttcgtgcaagaaaacaagaacttattttctcaattcttaaatac
catgcagacaaaggcgaagacatatatggcgaaggtatcttagaagttctacaagatggc
tatggctttttgagatcttctgatagctcgtattttgcatctcctgacgatatctatgtt
tcacctgcttttatcagaaagctaaatctaagaactggtgatagcatagttggtaagatt
cgcccacctcgtgataatgaaaaatactttgcagtaaagcatattgacagtgttaacttt
gattcacctgaattagctagaaaaaaaatcctatttgaaaacctaactccagaatacgct
aaagaaagactaactatggaaataggtaacggctcaagcgaagacataactgcaagagtt
attgatttagccgcaccatttggtaaaggtcagcgtggtctgatcgtagctcctcctaag
actggtaagacaatcatgatgcaaaatattgcaacatcaattgccaaaaaccatcctgaa
tgtaacctgattatgctacttattgatgagcgtcctgaggaagttacagaaatgcaacgc
tcagtgcgcggtgaagtagtagcatctacatttgatgaacctgcagctcgtcatgtccag
ttagcggaaatcgtaattgagaaagcaaaaagattagtagagcacaaacaagatgtagta
attctacttgactcaatcacaagacttgctcgtgcttataacactgtatctccagcatca
ggtcgtgtactatctggtggtgtagaggcaaatgctctgcaaaagcctaagagattcttt
ggtgctgcgcgtaatactgccgaaggtggtagtttaacaatcattgcaacagcacttgta
gaaactggctctaagatggatgaggttatctttgaggagttcaaaggtactggtaacatg
gaacttcatcttgatcgtaaaattgcagagcgtcgcgtattccctgctattagctttgat
agatctggtacgcgtagagaagagcttcttacaactcctgaagaactacaaaaactttgg
gttctacgtaagattcttggtggtatggaagatgttcaagctatggaattcctaacagaa
aaaatgaaaggttcattgactaatgaagagttcttcgagactatgaaaagaggtgctatt
taa
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