KEGG   Francisella philomiragia GA01-2794: LA55_770
Entry
LA55_770          CDS       T03620                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
fpz  Francisella philomiragia GA01-2794
Pathway
fpz02024  Quorum sensing
fpz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fpz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LA55_770 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LA55_770 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fpz03019]
    LA55_770 (hfq)
   03036 Chromosome and associated proteins [BR:fpz03036]
    LA55_770 (hfq)
Messenger RNA biogenesis [BR:fpz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LA55_770 (hfq)
Chromosome and associated proteins [BR:fpz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LA55_770 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM Carmo_coat_C
Other DBs
NCBI-ProteinID: AJI53894
UniProt: A0A080QA67
LinkDB
Position
795103..795432
AA seq 109 aa
MSRISSLQDPFLNALRKEKVSVSVYLVNGIKLQGQVEAFDQFCIVLRNTVNQMVYKHAIS
TIVPAKSVRMVYSSFNPYHQNANDDQDENVDDIHSDELEVQENQENINE
NT seq 330 nt   +upstreamnt  +downstreamnt
atgtcaagaatatcatctttacaagacccgttcttaaacgctctaagaaaagaaaaagtt
agcgtatctgtatatctagttaacgggatcaaactacaaggtcaagtagaagcttttgac
caattctgtatcgtacttagaaatactgtaaaccaaatggtttacaagcatgctatttct
actatagtaccagctaagagtgttagaatggtttatagctcttttaacccgtatcatcaa
aatgcaaacgatgatcaagatgagaatgtagatgatattcattctgatgagcttgaagtt
caagaaaatcaagaaaacataaacgaataa

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