Frankia casuarinae: Francci3_0409
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Entry
Francci3_0409 CDS
T00320
Name
(GenBank) Peptidoglycan-binding LysM
Organism
fra
Frankia casuarinae
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Gene cluster
GFIT
Motif
Pfam:
BTAD
LysM
Motif
Other DBs
NCBI-ProteinID:
ABD09796
RhizoBase:
Francci3_0409
UniProt:
Q2JFZ6
LinkDB
All DBs
Position
complement(481648..485805)
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AA seq
1385 aa
AA seq
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MSTPLPPPSTPLRSARPSSPPASMTSASPAAAPRSRRRLPRAGDPPYRMVDDRAGSVPAR
QPVPVVSAELRSRERLRAAGAIAAIAGVVLGVPVVLILVLGPPLQSRDGTGAVVRAILAL
LFWAAWLHFTACLIAECRAELRGTGLAPRIPLGGAPQNLARRLVATSVLFSGTTVLVAPM
TYARAPAVPPAPGRMGTAMPVSTTSAALVAPRPAPDDRAPALTRGDRAPVTTTTDPGAGA
PTQQTWPSRPEPGSSPAGPAGRMTPRVRHAELISPIADPNGRLMPNGRMMKLYEVRPAEG
RHHDTLWGIAERFLGDGLRYREIFDLNEGRAQPDGRTLSKPSLIHAGWVLLLPADAQGEG
LQTLHVPDSVPGWPAAETGTAPPTPGGYDLTDLDNHGPGDPGLDDPEPSYPDFEDPGPGD
SDGRLGASRALAVLDDTAAVVSARNTAVVTGGPTTPGLLTSDSFGPSSQGLLGIAAASLL
AAGVMVALSTRRAGPASPPEDETERALLLAADTDAARFVDRSLRVLSAGLTDLGRLLPPV
YAAILTDDLLILHMAPAEEEPPPPPWTVGEAPGSWRIERMPGLPGDQPAQMIAQMTAGVP
APFPALVTFGRDDAGSRILVDLEGAPGIISLIGDLDVATEVAIAVAIELGTNVWSDDLRV
CLVGFPADTGADLTTIAPARVWTADDLSAVLDELAGPQDDAGRTGVDPAPADPPTVTAGG
RDRVTGNPRALAPDLLILAAPPAAADVARLTRMANGRDDAVGVLTVGDTPAARWRFTVES
DRRVSLGVLGVQVRAQALSMTEYTSITALFHRADAAGSPARASGSLPDESLPDEGPPPPP
VSQPPAGPIVAGPTATGPATTRPDEPTRPPSQRGSMPGALPWTPKLSALTGPAFPQPLST
VPTPAGPLPDPGSATPEPRGAEPQDMHGRAAVLPGTGFPPTISPSDDDPTRPPSNGRRLP
TEPPPPTPKPPSPPRRTASAGPVLPTTTDTGDAPEAAGLLAHPGRPLIHPTDIPRVPPVV
YFETPRMRANRQGRVPAESIQPGTEAPPGPPAPPPPTTGYRTAIPPRPPIPPPNERLAAD
AHRAPPQTARARYADGDTTVPDVGVSRPPTGTPGAAPQRVPLETTPPADPTAPAEAQVRI
LGLPTVEGPGRPPAERIDLLTEVIVYLALHREGVDSRLLAEEIWPSDTTEEIADAALTEA
RQWLGTDASGLPRIMIGPDGRWWLSPDVRCDWELFVAYTHRAGLPGSDAEADLTTALRMV
SGPLWTDLPAGRYRWATTGPIARSTRAGVVDVAHRLAQLTLDFGDTMTAMAACRTGLRAV
PTSEVLWRDLLRTVAARGDRRTLQAVATEMYRTIGVGGVRRGGRAEAETDALVQTLLPGF
RRGRR
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccgctcccgccaccatcgacaccacttcgatccgcgcggccgtcctcgccg
ccggcatcgatgacgtccgcctctccggcggcggcaccgcggtcacgacggcggcttccg
cgtgccggcgaccctccctatcggatggtcgatgacagggccgggagtgtgccggcccgc
cagccggtgccggtggtctccgcggagctgcggtctcgggaacggctgcgcgcagccggg
gccatcgctgcgatcgccggtgtcgtcctcggcgttccggtcgtactgatcctggtactg
ggtccaccgctccagagcagggacggaaccggcgcggtcgtccgagccatcctggccctg
ctcttctgggccgcctggctgcacttcaccgcctgtctcatcgcggaatgccgagccgag
ctgcgcggtaccggcctcgccccgcggataccgctgggcggcgccccccagaacctcgcc
cgccgtctcgtcgccacatccgtgttgttctccgggacgacggttctggtcgccccgatg
acatacgcccgggcccccgccgttccgcctgcgcccggccggatggggacggcaatgccg
gtatcgacgacctcggcggccctggtcgctccgcggccggctccggacgacagggcgccc
gcgctcacgaggggtgatcgggctccggtgaccacgacaacggatcccggcgccggcgca
ccgacccagcagacctggccgtcacggccggaaccggggagcagcccggctggcccggct
ggccgcatgacaccgcgtgtccgccacgccgagttgatcagtccgatcgcggatccgaac
ggccggctcatgcccaacgggcgcatgatgaagctctacgaggtgcgacctgccgaggga
cgccaccacgacaccctctggggcatcgcggagcgcttcctcggtgacggtctacggtat
cgggagatcttcgacctcaacgagggtcgtgcccagccggacggccgcacgctgtccaag
ccatcgctcatccatgccggctgggtgctgctgctgcccgccgacgcgcagggcgagggc
ctgcagacactgcatgtaccggactccgtcccgggatggcctgccgccgaaacgggtacc
gcgccccccacccccggcggctacgacctcactgacctcgacaaccacggccccggcgac
ccgggcctcgatgatccagaacccagctatcccgatttcgaagaccccgggccgggggac
agcgacggtcgtctcggcgcctctcgtgcgctggcagtcctggatgacacggccgcggtc
gtctcggcgcggaacaccgcggtggtcaccggtggccccactacacccggcctgctcacg
tccgactccttcggaccgtcctcccagggtctgctggggatagcagccgccagcctgctc
gccgccggagtcatggtggcgttgtccacacgccgggcggggccggcgagccccccggag
gacgagacagagcgcgcgctgctcctggccgccgacacggatgccgcccgatttgtcgac
cgctcactgcgcgttctgtctgccggcctgaccgatctgggacgtctgcttcccccggtg
tacgcggcgatcctcaccgacgacctgctgatcctgcacatggcacccgcggaggaggag
cctccaccgcccccatggaccgttggcgaggcgcccgggtcctggcggatcgagcggatg
cccggtctgcccggtgaccagccggcccagatgatcgcccagatgacggccggcgtgccg
gctccgttcccggccctcgtcaccttcggccgggacgacgccgggtcacgcattctcgtc
gacctggaaggcgctccgggcatcatcagcctgatcggcgacctggacgtcgcgacggag
gtcgcgatcgccgtggcgatcgagctgggaaccaacgtgtggtcggatgatctgcgggtc
tgtctggtgggtttcccggccgacaccggagccgacctgacgacgatcgcacccgctcgg
gtctggacagcggacgacctgagcgccgtcctcgacgaactcgccggaccacaggacgac
gccggtcgcaccggcgtcgatccggcaccggcagacccgccgaccgtcaccgcgggcggc
cgcgatcgggtcaccggcaatccacgggcgctggcacccgatctactcattctcgcggcc
cctcccgcagccgccgacgtcgcccggttgaccaggatggcgaacgggcgggacgacgcc
gtgggagtcctcaccgtcggcgacaccccggccgcccgctggcgcttcacggtcgagtcg
gaccgccgcgtgtccctcggcgttctcggcgtccaggtacgggcgcaggctctgagcatg
accgagtacacctcgatcaccgcgctgttccatcgggccgatgcggcgggatctcccgcc
cgggcctcgggcagcctgccggacgagagtctgccggacgagggccccccaccacccccc
gtatcacagccgcccgccggaccgatcgtcgccggacccaccgcgaccgggccggcaact
acccggcccgacgagccgacaaggccaccctcacaacgcggctccatgcccggggcgctg
ccctggacgccgaaactctcagccctcaccgggcctgccttcccccagccgctctcgacc
gtccccactccggcaggcccactccccgaccccggctctgccacaccggagccacgcgga
gcggaaccgcaggacatgcacggtcgcgccgcggtcctgcccggcaccggattcccaccc
accatttccccatcggacgacgatccgacgcgaccgccctcgaacggccgccggctcccc
accgaacccccgccgcccacgcccaagcctcccagccctccgcgaaggaccgcatcggcc
ggtcccgtcctaccgaccaccacggacaccggcgacgcccccgaagccgccggtctgctg
gcccatccggggcgaccgctcatccacccgacggatatcccacgggtaccacccgtggtc
tacttcgagacgccccggatgcgagcgaaccggcagggccgcgtcccggccgaatcgatc
cagcccgggacggaggcaccacctggaccccctgcccccccgccgccaaccaccgggtac
cggaccgcgatcccaccccggccgccgatcccgcctccgaacgaacggctggcggcggac
gcgcaccgtgcaccgcctcagactgctcgggcgcgctacgccgacggagataccaccgtc
ccggatgtcggcgtttcacggcccccgacggggacgcccggggcggcgccacagcgtgtg
ccgctcgaaaccacgccgcccgccgatcccaccgcgcccgccgaggcgcaggtccggatt
ctcggactgcccaccgtcgagggtcccgggcgaccacccgccgagcgcatcgacctgttg
accgaggtcatcgtctacctcgcgctgcaccgggaaggcgtggacagtcggctcctcgcc
gaggagatctggccatccgacaccacggaggagatcgccgacgccgcgttgaccgaagcg
cgccagtggctggggaccgatgccagcggcttgcctcggatcatgatcggcccggatggc
cggtggtggctgagtccggatgtgcgctgcgactgggaactcttcgtggcctacacccac
cgggccggtctgccgggcagcgacgccgaggcggatctgacgacagccctgcggatggtc
agcggtcccctgtggacggatctgcctgccgggcggtaccgctgggcgaccaccgggcca
atcgcccgaagcacccgggcgggcgtggtcgacgtggcgcatcgcctcgcccagctgacg
ttggacttcggtgacacgatgacggcgatggcggcctgccgcaccgggctacgggccgtg
ccgacctccgaagtgctctggcgggacctgctgcgcacggtcgccgcacggggtgatcgc
cggactctgcaggctgtggcaacggagatgtaccgaactatcggtgtcggcggggtgcgt
cgcggcgggcgggccgaggccgagacggacgcactggtgcagaccctgctgcccggattc
cgtcgcggccggcggtag
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