Frankia casuarinae: Francci3_0574
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Entry
Francci3_0574 CDS
T00320
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fra
Frankia casuarinae
Pathway
fra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Francci3_0574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fra03021
]
Francci3_0574
03400 DNA repair and recombination proteins [BR:
fra03400
]
Francci3_0574
Enzymes [BR:
fra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Francci3_0574
Transcription machinery [BR:
fra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Francci3_0574
DNA repair and recombination proteins [BR:
fra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Francci3_0574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
CDPS
HisK-N-like
Motif
Other DBs
NCBI-ProteinID:
ABD09958
UniProt:
Q2JFI4
LinkDB
All DBs
Position
666530..670417
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITKVDTDARHRDLPTLEARIGVEKQQLEDKKNADVEVRQKRLEAD
LAQLEAEGAKGDARRKVRESAEREMRQLRDRVQRKIDDLDRVFDRFKNMKVQDLEPDELL
YRELRDRFGAYFDGGMGAEALQRRLADFDLAAEAESLRETIRSGKGQKKARALKRLKVVS
AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSRLAEGALGEGR
SFSSVAEAQMAFDAREVALQAKIRVRLRDTTPPSDWVPPADWVTGDVFTLETTFGRCLLN
EALPEGYPFINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSAGFYWATRSGVTVAIE
DVVAPPNKAEILDDYEQRADRVQKQFDRGFLSDEERRSELVQIWTEATNKIAEAMEENFP
ETNPVYVLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKANFREGLTVLEYFISTH
GARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGILTRIARKGADGVLVRDR
YAETSAYARTLASDAIDANGEVIVPAGTDAGDVAISQIIEAGIEQVRVRSALTCESRMGV
CAQCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGGVAGDDITQGLPRVVE
LFEARSPKGKAPITEVSGRVKIEETEKTFKVVVVPDDGSDEIAYPVSRRSRLRVREGDHI
EVGSQIVDGAVDPHEVLRILGPRQVQLHLVDQVQEVYRSQGVSIHDKHIEIIIRQMLKRV
NVLESGDTTLLPGELCERARFEAENRRVVETGGQPASARPVLMGITKASLATESWLSAAS
FQETTRVLTDAAINARSDSLVGLKENVIIGKLIPAGTGISRYRNIRVEPTEEARAAMYSV
GAYEDGGVEYGAFGTGSGQAVPLDEFDYRSSGDFR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
ttgctggacgtcaacttcttcgacgaactgcgcatcggtctcgccaccgcggatgacatc
cgccagtggtcgcacggtgaggtcaagaagcccgagacgatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgggccaaggtccgccgtgagcgcatgggccacatcgagctggctgcgccg
gtcacccacatctggtacttcaagggtgtcccgagccgcctcggctacctgctggacctc
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacaaaggtggac
acggacgcccgccaccgcgatctgccgaccctcgaggcccgcatcggcgtcgagaagcag
cagctcgaggacaagaagaacgccgacgtggaagtccggcagaagcggctcgaggccgac
ctcgcacagctcgaggccgagggcgccaagggtgacgcgcgacgcaaggtccgcgagtcg
gccgagcgcgagatgcgccagctccgggaccgggtgcagcgtaagatcgacgatctcgac
cgcgtcttcgaccggttcaagaacatgaaggtccaggacctggagccggacgagctgctt
tatcgcgagctgcgcgaccgcttcggtgcgtacttcgacggcggtatgggcgccgaggcg
ctgcagcggcggctggccgacttcgacctggccgccgaggccgagtcgctgcgcgagacc
atccgcagcggcaaggggcagaagaaggcccgcgcgctcaagcggctcaaggtcgtctcc
gcgttcctgaacacccgcaactccccgatggggatggtgctcgactgcgtcccggtgatc
ccacccgatctgcgcccgatggtgcagctcgatggtggccggttcgccacctcggacctc
aacgacctgtaccgccgggtgatcaaccggaacaaccggttgaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccggccggtcaccggcccgggtaaccgcccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctgggcaag
cgggtcgactactccggccgttcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtcggcgaagcggatggtcgagcgggcccgc
ccggtcgtgtgggacgtgctcgaggaggtcatcaccgagcaccccgtgctgctcaaccgg
gcgccgaccctgcaccgcctcggcatccaggccttcgaaccgcagctcgtcgagggcaag
gccatccagatccacccgctggtctgcacggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcgcggatcctgatgctg
tcgagcaacaacattctctcgcccgcatcgggccggccgctggcgatgccgagcctcgac
atggtgaccggggtgttccacctgtcccgcctggccgagggggcgctcggcgaggggcgg
tcgttctccagcgtcgccgaggcgcagatggccttcgacgcccgggaggtcgcccttcag
gcgaagatcagggtgcggttgcgggacaccaccccgccgtcggactgggtcccgcccgcc
gactgggtcaccggggacgtgttcaccctggagaccacgttcggtcgttgcctgctcaac
gaggcgctgccggagggctaccccttcatcaacgcccagctgaacaagaaggcccaggcc
gcgatcgtcaacgacctggccgagcggtacccgaagatccaggtagcggcgaccctggac
gccctgaagagcgccggtttctactgggccacccggtccggggtcaccgtcgcgatcgag
gacgtcgtcgcgccgccgaacaaggccgagatcctcgacgactacgagcagcgtgccgac
cgggtccagaagcagttcgaccgcggcttcctgtccgacgaggagcgccgcagcgagctg
gtccagatctggaccgaggcgaccaacaagatcgccgaggcgatggaggagaacttcccg
gagaccaacccggtctacgtgctggtcaactccggagccgctggaaacatgatgcagatc
cggcagctcgccggcatgcgtggtctggtctccaacccgaaaggtgagatcatcccgcgg
ccgatcaaggcgaacttccgcgagggcctgaccgtgctggagtacttcatctccacccac
ggtgcccgtaagggactcgccgacaccgccctgcgcaccgcggactcggggtacctgacc
cggcggctcgtcgacgtcagccaggatgtcatcgtccgcgaggaggactgcggcaccgag
cgcggcatcctcactcggatcgcccgcaagggcgccgacggggtgctggtccgggaccgg
tatgccgagacctcggcgtacgcgcggacgctggcctccgacgcgatcgacgcgaacggc
gaggtcatcgtgcccgccggcaccgacgccggggacgtcgcgatcagccagatcatcgag
gccggcatcgagcaggtgcgggtccgctcggcgctgacctgcgagtcccggatgggggtg
tgcgcccagtgctacgggcgctcgctcgccaccggcaagctggttgacgtcggtgaggcc
gtcggcatcgtcgccgcgcagtccatcggtgagcccggcacccagctgacgatgcgtacc
ttccacagcggtggcgtcgccggcgacgacatcacccagggtctgccgcgtgtcgtcgag
ctgttcgaggcgcgcagcccgaagggcaaggcccccatcaccgaggtctccggccgggtg
aagatcgaggagaccgagaagaccttcaaggtcgtggtggtgccggacgacggcagcgac
gagatcgcctacccggtctcgcggcgttcgcgcctgcgggtccgcgagggcgaccacatc
gaggtcggcagccagattgtcgacggtgccgtcgacccgcacgaggtgttgcgcatcctc
gggccgcgccaggtccagctccacctggtggaccaggtccaggaggtctaccggtcgcag
ggtgtgtcgatccacgacaagcacatcgaaatcatcatccgccagatgctcaagcgggtg
aacgttctcgagtcgggcgacaccaccctgctgcccggtgagctctgcgagcgggcccgg
ttcgaggcggagaaccgtcgggtggtggaaaccggtggccagccggcctcggcccgcccg
gtcctcatgggaatcaccaaggcgtcgctggcgaccgagtcgtggctgtcggcggcctcc
ttccaggagacgactcgggtgctcaccgacgcggcgatcaacgcccggtcggactcgctc
gtcggcctgaaggagaacgtcatcatcggaaagctcatcccggccggcaccgggatctcc
cggtaccgcaacatccgggtcgagccgaccgaggaggcacgtgcggcgatgtactccgtc
ggtgcctacgaggacggcggcgtcgagtacggtgcgttcggcacgggctccggccaggcg
gtcccgctggacgagttcgactaccgcagctcgggagacttccgctga
DBGET
integrated database retrieval system
