Frankia casuarinae: Francci3_1218
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Entry
Francci3_1218 CDS
T00320
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fra
Frankia casuarinae
Pathway
fra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Francci3_1218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fra03019
]
Francci3_1218
03009 Ribosome biogenesis [BR:
fra03009
]
Francci3_1218
Enzymes [BR:
fra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Francci3_1218
Messenger RNA biogenesis [BR:
fra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Francci3_1218
Ribosome biogenesis [BR:
fra03009
]
Prokaryotic type
rRNA processing factors
Francci3_1218
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ABD10596
UniProt:
Q2JDP6
LinkDB
All DBs
Position
1455263..1458847
Genome browser
AA seq
1194 aa
AA seq
DB search
MEPADTTEADAPSTTPVGEPGPVDKPATVESVTVVPARDDTARDDTVEATEPVPARRTRA
ARSRRAVREVTEVPVAPPAEDAPPAEDAPPAEDAPPTEDAPRDVVSPDVAAKPKRTRARR
AISGLMTPAAAVPDPAGSGTAAAGPVAAGPGDATILGPAMPDVGATGSVGVPAGSTAAVA
SAPDTPGPTDTSGPTDTPGPTEPESAQPGTDEPGVAEPAARESTAESRSAEPSSAEPSSA
EPEAGSTRSAATRARRATAPTWAGIHNEPVVETMIRPVLRRPAAMVTFQAPEPAVVEARW
RRAAELGSAATAVDAVAGTAFPSAERRHAEAPAHPRDEADVATDPDTTDPDTMGDLTGGE
EDSEFDDDPDGGGSASTRRRRRGRRGRGRARGDEDGVESGPEDGAAAADDTGREGVAQDT
DGVDGSSVAGQGTGSVPAVASDEGAETTPGAAEESAERDGEDEDDRLGGARRRRRRRRRA
GGDEPALADDPPNTVVHVRETRKDEDLVRGLSGSTRLEAKRQRRREGRDSGRRRPPIVTE
AEFLARRESVERRMVVRHAGERTQIAVLEDGVLVEHFVTRASSSSYAGNVYLGRVQNVLA
SMEAAFVDIGKGRNAVLYAGEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGA
RLTSQISLPGRYLVFVPDGQNAGISRKLPDTERARLKSILKKITPEDGGVIVRTAAEGAS
EAELERDIERLAAQWEDIERKAKKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSGE
AITIEEYIDTVAPDLRSRIRRYTGTGDVFAEYRVDEQLAKALDRKVWLPSGGSLVIDRTE
AMTVIDVNTGKFTGKGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNR
ELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCVHCNGRGVVIHL
DGGSGAHAAAGVPSGTIVSGAGQPTPVAVPAPAEGSGSGRRVRSSSASAVSASAVSTSAV
DGPAIIAAASAEPTSASESEASGGPGEPIGSAASSTPDAAENVAVTAGEGAIATAGVTAA
DTVPAPEPAHAADSAAGPAGGAAAAAAPGLGAAGSPAGSNGHVPAGGGSGAGGLEEALPP
VYANSDDPDSLATADNALSTVGKPARGRRRRASRPVSKPAESLESVPSAEPPSA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggaaccggcggataccaccgaagccgacgctccctcgaccaccccggtcggcgaacca
ggtccggtcgataaacccgccaccgtcgaatccgtcactgtcgtcccggcccgggacgac
acggcccgggacgacacggtggaggccaccgaaccggtgccggcgcggcgcacccgggcg
gcacgcagccgccgcgcggtgcgtgaggtgaccgaggtgccggttgcccctcccgccgag
gacgcccctcccgccgaggacgcccctcccgccgaggacgcccctcccaccgaggacgcg
ccgcgggacgtcgtatcgccggacgtcgctgcgaagccgaaacggaccagggcccgtcgt
gccatctccggactgatgacgcccgctgccgcggtgccggacccggccgggtccggcacc
gcggcggccgggccggtcgccgccgggcctggcgatgcgaccatcctcggtccggcgatg
ccggatgtcggtgcgaccgggtccgtcggtgtacccgcgggttcgaccgccgccgtggcg
tcggctcccgacacgcccgggcctacggacacatccgggcctacggacacgcctgggccc
acggaaccggagtccgcgcagcccgggaccgacgagcccggcgtcgccgagccggcggcc
cgggagtcgaccgctgagtcgagatctgccgagccgagctctgccgagccgagctctgcc
gagcccgaggccggcagcacccggagcgcggcgacaagggccaggcgggcgaccgctccg
acctgggccgggatccataacgagccggtcgtcgagacgatgatccgtcccgtgctccgg
cgaccggccgccatggtgaccttccaggctcccgaaccggcggtcgtggaggctcgctgg
cggcgtgccgccgaactcggatccgccgccaccgcggtggatgccgtggcgggcacggcg
ttcccgtccgccgagcggcggcatgccgaggcaccggctcacccccgggacgaggcggac
gtggccaccgatcccgacacgaccgatcccgacacgatgggcgacctcacgggcggcgag
gaggacagcgaattcgacgacgacccggatgggggcggctcggcctccacccgccgtcgg
cgccgtggtcgccgtggtcgtggtcgggcccggggcgacgaggacggcgtggagtccggc
ccggaggacggcgccgcggccgcggacgacacgggtcgcgagggtgtggcacaggacacg
gacggtgtggacggctcgtccgtggccgggcagggaaccgggtcggtgcccgccgtcgcg
tcggatgagggcgccgagacgacccccggcgcggcggaggaaagtgccgagcgtgacggt
gaggacgaggacgaccggctgggaggggcccgccgtcggcggcggcggcgccgtcgcgcc
ggcggcgacgagccggcgctcgccgacgacccgccgaacacggtcgtccacgtccgggag
acccgcaaggacgaggacctggtccgggggctgagcgggtccacccgtctggaggccaag
cgtcagcggcgccgggagggccgcgacagtggtcggcgtcggccaccgatcgtcaccgag
gcggagttcctggcccggcgggagtcggtcgaacgccggatggtcgtccgccacgcgggg
gagcgcacccagatcgccgtgctggaggacggggtactcgtcgagcacttcgtgacccgg
gcgagctcgtcgtcctatgcgggcaacgtctacctcggccgagtacagaacgtgctggcc
agcatggaggcggccttcgtcgacatcggtaagggacgcaatgccgtcctctacgccggc
gaggtcaactacgacgcatccgggctggacggtcggcctcgcaagatcgagcaggtgctc
aagtccggtcagtcggtcctggtccaggtgtccaaggatccgatcgggcacaagggcgcg
cggctcaccagccagatcagtctgccggggcggtacctggtgttcgtcccggacggacag
aacgccgggatcagccgcaagttgccggacaccgaacgagctcggctcaagagcatcctg
aagaaaatcacgcccgaggacggtggggtcatcgtgcgcaccgcagccgagggtgccagc
gaggccgagctggaacgcgacatcgagcggctcgccgcccaatgggaggacatcgagcgc
aaggcgaagaaggcgtcggcgccctcgctgctctacggcgagccggacctggtcgtccgg
gtgatccgggacatcttcaacgaggacttcaccgagctggtcgtccagggctcgggtgag
gccatcacgatcgaggagtacatcgacacagtggctcccgacctgcggtcgcggatccgc
cgctacaccggaaccggtgacgtcttcgccgagtaccgggtagacgagcagctcgccaag
gccctcgaccgcaaggtctggctgccctcgggtggatcgctcgtcatcgaccggaccgag
gcgatgacggtcatcgacgtcaacacgggcaagttcaccggcaagggcggcaacctcgag
gagacggtcaccaagaacaacctggaagccgccgaggagatcgtccgtcagctgcggctg
cgggatatcggtggcatcattgtcatcgacttcatcgacatggttctggagagcaaccga
gaactggtcctgcgccggctcaccgagtgccttggccgggaccgtacccggcaccaggtc
gccgaggtgaccagcctcgggctggtccagatgacccgcaagcgggtggggcagggcctg
ctggaggcgtacagcgagccgtgcgtgcactgcaacggccgcggggtggtcatccacctc
gacggcggcagcggtgcacacgccgcagccggcgtgccgagcgggaccattgtgtccggt
gccggtcagccgactccggtggcggtgcccgcgccggcggaggggtccgggtccggtcgt
cgggtccgctcctcgtccgcgagtgccgtgtccgcgagtgccgtgtccacgagtgccgtc
gacggccccgcgatcatcgccgccgcgtcggccgagcctacgtccgcatccgaatccgag
gcgtccggcggacctggcgaacccatcggatccgccgcatcatcgacgcccgacgccgcg
gagaacgtcgccgtgacggccggcgagggtgcgatagccaccgcgggcgtcaccgccgcg
gatacggtgcccgcgcccgagcccgcgcatgcggccgacagtgcggcggggccggcgggc
ggggccgcagctgccgccgccccgggactcggggcagccggttccccagccgggtcgaac
gggcatgtgcccgctggcggtggctccggcgcgggcggcctcgaggaggccctgccgccg
gtgtacgccaactccgatgatcccgacagcctcgcgaccgcggacaacgccttgtccact
gtgggcaaaccggcccggggccgacgacggcgggcctcccggccggtgtccaagccggcc
gagtcgctggagtccgtgccctcggcggaacccccgagcgcctga
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