Frankia casuarinae: Francci3_1325
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Entry
Francci3_1325 CDS
T00320
Name
(GenBank) 23S rRNA m(5)U-1939 methyltransferase
Organism
fra
Frankia casuarinae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltr_RsmB-F
PCMT
Methyltransf_31
MTS
Cons_hypoth95
Methyltransf_5
FtsJ
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
ABD10702
RhizoBase:
Francci3_1325
UniProt:
Q2JDE0
LinkDB
All DBs
Position
1588227..1589693
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AA seq
488 aa
AA seq
DB search
MSRQRRPARSRVFGGTARQARVPGIAVGSLLDLDVGPVAHGGFCVARSGGRVVFVRHALP
GERIRARVTDASHERYWRADAVAVLTPSPDRVVAPCPHAGPGLCGGCDWQHAGLAAQRRG
KAEVVADALRRFGGLDARVSPAHAGSGLGTAAEAGPGAEPALEVLVEAVPVGGPERLTGS
DRPGGADDGLAWRTRMRFAVTAGGEVGLRASRSHEVVATPDCRIAHPLVLAALAGRRFPG
ADAVEVAASPATGQVAVAVHPAGAGTVVNDEHAGTGEDPGEVGAPGEVVEVVGGRRFRLG
PEVFWQVHPAAPGVLVDAVREALRPRAGETALDLYAGTGLFAAFLAEDVGAAGRVIALES
DAASVAAAANNLADLPWVSLRALRVTPATVRGVVGTGGPAGRVDLAVLDPPRTGAGPAVV
AALLAHRPRAVAYVACDPVALGRDLAAAAAAGYDLVVLRAFDLFPMTAHVECVALLEPRG
ADRNPNLV
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcgacagcgtcggcccgcgcgatcgcgcgtcttcgggggcaccgcacggcaggcc
cgcgtgccggggatcgcggtcggctcgctgctcgacctcgacgtcgggccggtggcccac
ggcggcttctgcgtcgcccgctcgggcggtcgggtggtgttcgtccgccatgccctgccc
ggcgaacggattcgtgcccgagttaccgacgcctcccacgagcggtactggcgggcggac
gcggtcgccgtcctgacgccctcgccggaccgggtggtcgcgccctgcccgcacgccggt
ccagggttgtgcggggggtgcgactggcagcatgccggcctcgcggcgcagcggcgcggt
aaggccgaggtcgtggccgacgcccttcggcggttcggcggcctcgacgcccgggtcagc
cccgcgcacgccgggtccggcctagggacggcggccgaggccggacccggcgccgagccg
gcgctggaggtgctggtcgaggcggtgcccgtcggcggtccggagcggctgaccggatcc
gaccggcccggtggcgccgacgacggactggcgtggcggacccggatgcgcttcgcggtg
acggccggcggcgaggtcgggctgcgggcgagccgctcgcacgaggtggtggcgacgccg
gactgccgcatcgcccaccccctcgtcctcgcggcgctcgccggccggcggtttcctggg
gccgacgccgtcgaggtcgcggccagcccggcgaccgggcaggtggccgtggcggtgcat
cccgccggtgccgggacggtcgtcaacgacgagcacgccgggaccggcgaggatcccggg
gaggtcggagcccccggggaggtcgtcgaggtggtgggggggcggaggttccggctcggg
ccggaggtgttctggcaggtccatccggcggctcccggcgtgctggtggacgcggtccgc
gaggccctgcgtccccgagccggggagaccgcgctcgacctgtatgccgggacgggcctg
ttcgcggcgttcctcgcggaggatgtcggcgccgctggccgcgtcatcgcgctggagtcc
gacgccgcgtcggtcgcggccgcggcgaacaacctcgccgatctgccatgggtctcgctg
cgggcgttgcgggtgacgccggctaccgttcgtggggtggtcggtacgggcgggccggcc
ggccgggtcgatctcgcggtgctcgacccgccgcgcaccggggcgggcccggcggtggtg
gccgcgctgctcgcccatcgcccccgcgcggtcgcctacgtcgcctgcgatcctgtcgcg
ctgggtcgggacctcgccgccgcggcggccgcgggctacgacctcgtcgtgttgcgcgcc
ttcgacctgtttccgatgaccgcccacgtcgagtgcgtggcactgctcgagccgcgcggc
gcggaccggaatccgaacctggtgtga
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