Frankia casuarinae: Francci3_1621
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Entry
Francci3_1621 CDS
T00320
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
fra
Frankia casuarinae
Pathway
fra03030
DNA replication
fra03410
Base excision repair
fra03420
Nucleotide excision repair
fra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Francci3_1621
03410 Base excision repair
Francci3_1621
03420 Nucleotide excision repair
Francci3_1621
03440 Homologous recombination
Francci3_1621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fra03032
]
Francci3_1621
03400 DNA repair and recombination proteins [BR:
fra03400
]
Francci3_1621
Enzymes [BR:
fra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Francci3_1621
DNA replication proteins [BR:
fra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Francci3_1621
DNA repair and recombination proteins [BR:
fra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Francci3_1621
NER (nucleotide excision repair)
GGR (global genome repair) factors
Francci3_1621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DNA_pol_lambd_f
HHH
Motif
Other DBs
NCBI-ProteinID:
ABD10997
RhizoBase:
Francci3_1621
UniProt:
Q2JCJ5
LinkDB
All DBs
Position
1945247..1948084
Genome browser
AA seq
945 aa
AA seq
DB search
MSVTTSSPTSSPSGSRSAASATGATGATGATAATAAGPAVSSPSPAPSSPAKSTPATPRL
LLLDGHSLAYRAFYALPVENFSTTTGQPTNAVYGFTSMLINVLRDERPTHVAVAWDLPTP
TFRHTQYAEYKAGRGETPADFVGQVSLIHQVCDALAVPGVSAPGYEADDVIATLATLGAA
EGMDVLVVTGDRDALQLVDERVTVLMTRKGISDMVRFTPDEVQAKYGLSPVQYPDFAALR
GDPSDNLPSVPGVGEKTATKWIQQFGSLAELVDHADEIGGKTGASLRAHLSEVIRNRSLT
ELSRDVPLDVVPAGLRMRPWDREAVHQLFDTLQFRVLRERLYAALAIAPPPADEGFEIEL
TVLGPGEVARWLAEHAHRVGRTGLHARGTWGRGTGVLAGLALAAAGGAAAWIDPTLLTPA
DVAALGAWLADPNQPKAAHDVKGPMLALTELDLPLAGVTSDTALAAYLALPGQRSFDLAD
LVARYLHRDLSADPVPGGQQLTLDGSGEADQAHADAVRARACLELADALDADLERRSAAT
LLRDIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVGRPFNLGSPK
QLQQILFDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDVARLKTVVDSL
IPMIDDIGRIHTTFNQTIAATGRLSSADPNLQNIPIRTAEGRQIRRAFVVGAGYETLLTA
DYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAMSYGL
AYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLRGVVERARKDGYTETILGRRRY
LPDLTSDNSQRRQMAERMALNAPIQGSAADIIKIAMLGVDRALCAGGYASRLLLQVHDEL
VLEIAPGEHDAVERLVRAEMTSAYTMSVPLDVSVGAGCTWDDAAH
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcaccacttcgtcccccacctcgtctccgtccgggagccgctcggcagcgtcc
gccactggggccactggggccactggggccactgcggccactgcggccggcccggccgtg
tcctcgccgagtcccgcgccatcgagccccgcgaagtcgaccccggcaacgccccggttg
ttgctgcttgatgggcactcgctggcctaccgtgccttctacgcgctgccggtggagaac
ttctccaccaccacgggccagccgacgaacgcggtgtacggattcacctccatgctcatc
aacgtcctgcgcgacgagcggccgacccatgtcgccgtggcgtgggacctgccgaccccg
accttccggcacacccagtacgccgagtacaaggccggtcggggcgagaccccggccgac
ttcgtcggccaggtcagcctcatccaccaggtgtgcgacgccctcgcggtgccgggggtc
agcgcgccgggatacgaggccgacgacgtgatcgccacgctcgcgaccctgggcgcggcc
gaggggatggacgtgctggtcgtcacgggtgaccgtgacgcgctgcagctggtcgacgag
cgggtgacggtgctgatgacccgcaagggcatcagtgacatggtccgcttcacccccgac
gaggtgcaggcgaagtacggcctgtccccagtgcagtacccggacttcgcggccctgcgc
ggggatccctccgacaacctgccgtcggtgccgggggtgggggagaagaccgccaccaag
tggatccagcagttcggctcgctggccgaactggtcgaccatgccgacgagatcggcggg
aagaccggggcgtcgctgcgcgcccacctgtccgaggtcatccgcaaccgttccctgacg
gagctgtcccgtgacgtgccgctcgacgtcgtccccgccggcctgcggatgcggccctgg
gaccgggaggccgtccaccagctgttcgacacgctgcaattccgggtgctgcgggagcgg
ctctacgcggccctcgcgatcgcgccgcctcccgccgacgaggggttcgagatcgagctg
accgtgctcgggccgggcgaggtggcccggtggctcgccgagcacgcccacagggtcggc
cgtaccggcctgcacgcccggggcacctgggggcgcggcaccggtgtgctcgccggtctc
gcgctggccgcggccggcggtgccgcggcctggatcgacccgacgctgctcacccccgcg
gacgtggcggcgctgggcgcctggctcgccgatccgaaccagccgaaggccgcccacgac
gtgaaggggccgatgctggccctgaccgagcttgacctgccgctcgccggcgtcaccagc
gacaccgcgctcgcggcctatctggctctgcccggccagcggtccttcgacctggccgat
ctcgtcgcccggtacctgcatcgcgacctgtccgccgaccccgtcccgggcggccagcag
ctgaccctcgacggctccggcgaggccgaccaggcgcacgcggacgccgtgcgggcccgg
gcctgcctcgagctcgccgacgccctcgacgcggacctcgaacgccgctccgccgccacc
ctgctgcgggacatcgaactcccgctggtcacggtcctggccggcatggagcgggccggc
atcgccgtggactccgagcacctgaccgagctgcagaagcactacggcggcgaggtcagc
gcggtcgccgcgcaggcccacgagatcgtcggccggccgttcaacctgggctcccccaag
cagctgcagcagatcctcttcgacgagctgggcctgcccaagaccaagaagatcaagacc
ggttacaccacggacgccgacgccctcgcctggctggcggtccagtccgaccatccgctc
ctgccggtgctgctgcggcaccgcgacgtggcccgcctcaagacggtcgtcgactcgctg
atccccatgatcgacgatattgggcgcatccacaccacgttcaaccagacgatcgccgcg
accggccggctttcctccgcggacccgaacctgcagaacatcccgatccggacggccgag
gggcgccagatccgccgggccttcgtcgtcggcgcgggctacgagacgctgctgacggcg
gactactcgcagatcgagatgcggatcatggctcatctttcgggtgacgagggcctcatc
gaggcgttcggctccggcgaggacctgcacaccttcgtggccgccgaggcgttcggcctg
ccggtctccgaggtcgacccggagctgcgccggcggatcaaggcgatgtcgtacggcctg
gcctacgggttgtccgcgttcggcctcgccgggcagctcggcatcgcgccggacgaggcc
cgggagcacatggacgcctacttcgcccggttcggcggggtccgcgacttcctgcgtggg
gtcgtggaacgggcccgcaaggacggctacaccgagacgatcctcggccgccgtcgctac
ctgcccgatctgaccagcgacaactcccagcggcggcagatggccgagcggatggcgttg
aacgcgccgatccagggttccgccgcggacatcatcaagattgcgatgttgggggtcgac
cgggcgctgtgtgccggggggtacgcctcccggctgctgctccaggtgcacgacgaactc
gtcctcgagatcgcgcccggcgagcacgatgcggtcgagcggctggtccgggccgagatg
acctccgcgtacaccatgtcggtgccgctcgacgtgagcgtcggcgccggctgcacctgg
gacgacgcggcgcactga
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