Frankia casuarinae: Francci3_2122
Help
Entry
Francci3_2122 CDS
T00320
Name
(GenBank) transcriptional regulator, SARP family
Organism
fra
Frankia casuarinae
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BTAD
TPR_12
TPR_2
TPR_10
TPR_8
TPR_1
TPR_16
TPR_7
TPR_MalT
Trans_reg_C
AAA_16
TPR-S
AAA_22
TPR_SusR
NB-ARC
RuvB_N
IstB_IS21
nSTAND3
nSTAND1
NACHT
AAA_33
AAA
TPR_9
AAA_5
Motif
Other DBs
NCBI-ProteinID:
ABD11494
UniProt:
Q2JB48
LinkDB
All DBs
Position
complement(2489625..2492840)
Genome browser
AA seq
1071 aa
AA seq
DB search
MVDSINAFMIFGPLEIILKGEIISIESGKLRTLLAALLLDAGSVVGSDRLIDWLWDDHQP
ANPRGALHTYIRRLRQLLGDPKMLSTVSSGYRLNLGTAVLDLQQFRRLIRGAEETADPQA
QAKLLTDALAIWRGPALADVPSESLRREKGAALEEERMSALESRFELEVRLNRAAQIVRE
IRLAAIDNPYREKFWELLMLALYRAGRQAEALDVYQQVRTLLVDELGIEPGSGLRDLHGR
ILESDPQLCLPDRSAPDAATPSTVPAQLPADAIGFVGRQELMDQLTEALRPSGTRPGVPV
VVLCGPPGIGKTALAVSLGHRLRPAFPDGQLYVNLRSHERLGQDPPLTPEHVLPQFLRSL
GVPPGQIPVELAEQANLFRSKVAGRHVLVMLDNASSIDQVMPLLPGDAGCSVIITSRRHL
GGLVATLGAQVVQVGTLSPEESRELVEGMLRNVAVPVDPALIPEVVALCAYLPLALRIAA
ANLISFPGGHADEYVDSLRTGNRLAALTVDDDPVSAVSNAFALSYDSVGPDDRRLFSLAG
LFPGPDFSANAVAVLADMSTAQTRNSLNRLTVANLLQQQAPGRYQFHDLLREYAYKRAGD
HFTAQEIAAAVDRLGLWYLVGTRNAVDILHVEFLRLPLPPETRSVIDAPEFVDESQAMAW
LLAEWRNVLACMRALDGSCSSHLTWHLSDALRGFFWTGRYRTEWSEAAHGGLIAAGRSKD
KLGMAAMHRSLANLYNTLGDYRQAINHLAESVALHTDLGMSEEVAAILNNLSLAHLSLSQ
VDQAERIGQEALAIAREVGSPRTEAAALGLLGQIHWAQGDMTVATIYITSSLRAAGELGL
HHITSYSLRNLGLVREALGDLDAAKSCFSQALEVSTRIDSFYDRSISLYGLALVHHDVGD
NQAALEFAEQALGAFQECGDRTFEAETLCIMSGINAERGDWTASIQCARQAFERANAIDY
TDGKAYSLVRIALADDHFGRAAAAALHAADAFALVAGTNRITQRRILVDLGLMYAEQQEF
ERATECAQRLRTISEETGQLLGAAEAKRIMALVTRRSNLLPSAEPLRNEAS
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggtggacagcatcaatgcgttcatgatcttcggtcctctggagatcattctcaaagga
gagatcatctcgattgagtccggaaagctccgcaccctgctggcagccctcctgctggac
gcgggcagcgtcgtcggctccgatcggctgatcgactggttgtgggacgaccaccagcca
gcgaacccgcggggagcgctacacacgtacattcggcggctccgtcagctcctgggcgac
ccgaagatgctgagcactgtcagtagcggctaccgcctgaacctcgggacggcggtcctg
gacctgcagcagttccgccggctgatcaggggggccgaggagacggcggacccgcaggct
caggcgaaactgctgaccgacgcgctggcgatctggcgcggccccgcgctggccgacgtg
ccctccgagtccctgcgccgggagaagggcgcggcgctggaggaggaaaggatgtccgcg
ctggagtcccgcttcgagctcgaggtgcgcttgaaccgagccgcccagattgtccgcgag
atccgcctcgcggctatcgacaatccctatcgggagaagttctgggagctgctgatgctg
gccctgtaccgggccggccggcaggccgaggcactggacgtctaccagcaggtgcgcacg
ctgctggtagacgagctcggcatcgagcccggcagcggcctgcgggacctgcacgggcgg
atcctcgagtccgacccgcagctgtgcctgccggatcggtccgcacccgacgcggcgacg
ccgtccacagtgccggcccagctccccgccgacgcgatcgggttcgtcggccggcaggag
ctgatggaccagctcaccgaggccttgcgcccgtctgggacgcgcccgggcgtaccggtc
gtcgtgttgtgcgggccgcccggaatcggcaagacggcgctggctgtaagtctcggccac
cggttgcggccagcgttcccggacgggcagctgtacgtcaacctgcgcagccacgagcgg
ctcggccaggacccgccgctcactccggagcatgtgctgccgcagttcctacgcagcctc
ggcgttccgccgggccagatcccggtcgagctggccgagcaggcgaacctgttccgatcg
aaggtcgccggccgacacgtgctggtgatgctcgacaacgcctcgagcattgaccaggtg
atgccgctgttgcccggcgacgccggttgctccgtcatcatcaccagccgacggcacctg
ggtggcctggtcgccacgctgggcgcgcaggtcgtccaagtgggcactctgagccccgag
gagtcccgcgagctcgtcgagggcatgttgcgcaacgtcgctgtcccggtggatcctgcg
ctgattccggaggtggtggcgctgtgtgcgtatctccccctcgccctgcgcatcgccgcc
gccaatctgatcagtttcccgggcggccacgccgacgaatacgtggacagcctgcgcacg
ggcaaccggctggcggcgcttaccgtggacgacgacccggtctcggcggtgtccaacgcc
ttcgcgctgtcctacgactcggtcgggccggacgatcgccggttgttcagcctggccggg
ctcttccccgggcccgacttctcggccaatgccgtcgctgtcctggcagacatgagcaca
gcccagacccgcaactcgttgaacaggctcacggtggcgaacctgctgcagcagcaggcg
cccggccggtaccagtttcacgacctgctgcgggaatacgcttacaagcgggcaggcgac
catttcactgcccaggagatagcggcggcagtggaccgtctcggcctgtggtacctggtc
ggcacgagaaacgcggtggatatcctgcacgtggagttcctccggctcccgctgccgcca
gaaacacgctccgtgatcgacgcgccggaattcgtcgacgagagccaggcgatggcctgg
ctgctcgcggagtggcgcaacgtccttgcttgtatgcgcgcgctcgacggttcctgttca
agccatctgacctggcatctttccgatgcgctccgcgggttcttctggaccggaagatat
cggactgaatggtcggaggcggcgcacggcggtctgattgcggccggtcggagtaaggac
aagctcggcatggccgcgatgcaccgcagtctcgccaacctgtataacacgctaggtgac
tatcgtcaggcgataaaccaccttgctgaaagtgtcgccctgcacaccgacctcggcatg
tccgaggaggtggccgccatcctgaacaacctcagtctcgcccatctgagtctcagccag
gtcgatcaggccgagcgcatcgggcaggaggccttggcgatcgcccgggaagtcgggtcc
ccgcggaccgaggccgccgcgcttggactactcggccagatccactgggctcagggcgac
atgactgtggccacgatctacatcacgtcgtcgctgcgggccgccggcgagctcgggctg
catcacatcacctcgtacagcctgaggaacctgggcctggtacgtgaggcgttgggagat
ctggacgctgcgaagtcctgcttctcccaggctcttgaggtctccacgcgtatcgactcc
ttctacgaccggagcatctcgctctacgggctcgcgctggtgcaccacgatgtcggtgac
aaccaggccgcgcttgagttcgccgagcaggcgctgggcgccttccaggagtgcggtgac
cggacctttgaggcggagaccctctgcatcatgtcggggatcaacgccgagcgcggggac
tggaccgcatccatccagtgcgcccggcaggcattcgaacgggcaaacgccatcgactac
accgacgggaaggcctactcgctcgtccggatcgcgctcgcggacgaccacttcggccgt
gccgccgccgcggcgctgcacgcggcagacgccttcgccctggtggccggcaccaaccgg
atcactcagcgcaggatcctggtagacctcgggctgatgtacgccgagcagcaggagttc
gagcgagccaccgaatgcgcacaacgcctgcgcaccatctcggaggagaccgggcagctt
ctgggcgcggccgaggcgaaaaggattatggccctggtcacgcgccggtcgaaccttttg
ccatccgccgaacccctccggaacgaagcgtcgtag
DBGET
integrated database retrieval system
