Frankia casuarinae: Francci3_2605
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Entry
Francci3_2605 CDS
T00320
Name
(GenBank) DSH-like
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
fra
Frankia casuarinae
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fra03019
]
Francci3_2605
Enzymes [BR:
fra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Francci3_2605
Messenger RNA biogenesis [BR:
fra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Francci3_2605
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
IstB_IS21
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABD11967
UniProt:
Q2J9S5
LinkDB
All DBs
Position
complement(3074409..3077489)
Genome browser
AA seq
1026 aa
AA seq
DB search
MSSTPEILVEFAAGLPFGLDPFQFEAVAALAAGEGVLVAAPTGAGKTVVGEFAAHLALRT
GTRCFYTTPIKALSNQKYADLVSRYGAVSVGLLTGDTSRNGDAPIVVMTTEVLRNMLYAG
PVDNGRLDDLGYVVMDEVHYLADRQRGAVWEEVIIHLPAQVRLVSLSATVSNAEEFAEWL
VTVRGHTRVIVSDHRPVPLWQHVLADRTLYDLFLEDTAGTPPPGGPEALRATLDGDLVRS
RWNVGVEAGFEVAGTRRATIGDRDRGGDRDRGGDRDRGGDRDRGRGRGGNRNGERGRATQ
GGRGGDRGRNGGAGQAPVAAIPAARGGPTAVGGRVVNPDLLRLAREESRALSGGSPAVGR
GRPAPGARRRTWVPGRPEVVERLDRDGLLPAIVFVFSRAGCDAAVTSCVRAGLRLVGPAE
QQRIRTLVRERTAGIPETDLAVLGYWAWLEGLERGIASHHAGMLPTFKEIVEELFVQGLV
RVVFATETLALGINMPARTVVLERLTKFNGESRVDITPGEYTQLTGRAGRRGIDVEGHAV
VLWQPGLDPLALAGLASTRTYPLRSSFRPSYNMAVNLVGRLGRERARTVLESSFAQFQAD
RAVVGLARAVQRNTEAIDAKREALSCDKGDIGEYDRLRREIAEREAALSREGSARRRAES
AAALARLRTGDIVRVPAGRRSGLAVVLDADAAANAADGPRPVVLTADRQVRRLSLTDFPI
AVEPLGRVRVPRSFNPRSPQSRRDLASSLRAADVNPDAPPGRRARVRSAAADDAELARLR
RALRAHPVHDCPRREEHLRSAEQVNRLVKETAAISRKVEGRTNTVAKTFDRVRAALEDLG
YLDGDRVTAAGRVLARIYSEQDLLVAECLRAGIWDDLTPPALAAAVSTLVFEPRGDDAGV
PALPGGAALRDCLAEMVRLSERLAEAEQAHRLAFLRPPELGFVAVAHDWAAGRTLERVLT
DSSVELTAGDFVRWMRQLIDILDQIAQVAPMVQADPGTPDGARVRRTARAAMDAVRRGVV
AYAMSV
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctccacgcccgagattcttgtggagttcgccgctggcctccccttcggactcgac
ccgttccagttcgaggcggtcgcggcgctggctgccggtgaaggggtgctcgtcgcggcc
ccgacgggagcgggtaagacggttgtcggcgagttcgccgcccatctcgccctgcgcacc
gggacgcgttgcttctacacgacgccgatcaaggcgctgtcgaaccagaagtacgccgat
ctcgtctcccgctacggcgccgtctcggtcggcctgctgaccggggacacctcccgcaac
ggcgacgccccgatcgtggtgatgaccaccgaggtcctgcgcaacatgctctacgccggc
ccggtcgacaacggccggctggacgacctcggctatgtcgtcatggacgaggtgcactac
ctcgccgaccgccagcgcggcgccgtgtgggaggaggtcatcatccatctgccggcgcag
gtccggctggtctccctgtccgcgacggtgagcaacgccgaggagttcgccgagtggctg
gtcacggtgcgcggccatacccgggtcatcgtcagcgatcaccgtcccgttccgctgtgg
cagcatgtgctcgctgaccgcaccctgtacgacctgttcctcgaggacactgccggcacc
ccgccgccgggcggacccgaggcacttcgtgccaccctggacggtgatctcgtccggtcg
aggtggaacgtcggggtcgaagccggattcgaggtagccggcacccggcgcgccaccatc
ggcgaccgggaccgcggcggcgaccgggaccgcggcggcgaccgggaccgcggcggcgac
cgggaccgcggacgggggcggggcggcaaccgcaacggcgaacggggccgggccacccag
ggtggtcgcggtggcgaccgtggccgcaatgggggtgccggccaggcgcccgtggcagcc
atccccgcggcccgtggtggtccgacggcggtcggtggacgagtggtgaacccggacctg
ctgcggctggcccgcgaggagagccgggcgctgtcggggggctctcccgcggtcggccgc
ggtcggccggcgcccggcgcgcgccggcggacgtgggtgccgggccggccggaggtcgtc
gaacggctcgaccgcgacggcctgctcccggcgatcgtcttcgtgttcagccgggccggc
tgcgatgcggcggtcacctcctgcgtgcgtgcgggtctgcggctcgtcggccccgcggag
cagcagcggatccggaccctggtccgggaacgcaccgccgggatccccgagaccgacctc
gccgtgctcggctactgggcgtggctggaggggctggaacgcggcatcgcatcccaccac
gccggcatgctgccaaccttcaaggagatcgtcgaggagctgttcgtccaggggctggtc
cgggtggtcttcgccacggagaccctggcgctcggcatcaacatgcccgcccgtaccgtc
gtgctggagcggctgacgaagttcaacggcgagagccgcgtggacatcaccccgggggag
tacacccagctgacgggccgcgccgggcggcgcggcatcgacgtggagggccacgcggtc
gtcctgtggcagccggggctggatccgctcgcgctcgcggggctggcctccacgcggacc
tatccgctgcgctcgtcgttccggccgtcgtacaacatggccgtcaacctggtcggcagg
ctcgggcgggagcgggcacgcaccgtgctggagtcgtcgttcgcgcagttccaggccgac
cgggccgtggtgggcctggcccgggcggtgcagcgcaacaccgaggcgatcgacgcgaag
cgtgaggcgttgagctgcgacaagggtgacatcggcgagtacgaccggttgcgccgggag
atcgctgagcgggaggccgcgctgtcgcgggagggttcggcgcgccggcgggccgaatcc
gcggcggcgctcgcccggctgcggaccggggacatcgtgcgggtgcccgccgggcggcgc
agtgggctcgctgtcgtgctcgacgccgacgccgccgcgaatgccgccgacggcccgcgg
ccggtggtgctcaccgcggacaggcaggttcgcaggctgtccctgaccgacttcccgatc
gccgtcgaaccgctcggccgggtccgggtgccgcggtcgttcaacccgcgctcgccgcag
tcacgccgggatctggcctcctccctgcgcgccgccgacgtcaaccccgatgcccctccg
ggccggcgggccagggtccgttcggccgcggcggacgacgccgagctcgcccggctgcgc
cgggccctgcgcgcccatccggtgcacgactgtccgcgccgcgaggagcacctgcgctcc
gccgagcaggtcaaccggctggtcaaggagaccgccgcgatctcacggaaggtggagggc
cggacgaacacggtcgcgaagacgttcgaccgggtccgcgccgcgctcgaggacctcggc
tacctggacggggaccgcgtcaccgccgccgggcgggtgctcgcgcgcatctactcggag
caggacctgctcgtcgccgaatgcctgcgcgccggcatctgggacgatctcaccccgccg
gcgctggccgccgccgtgtccacgctggtgttcgagccgcgcggtgacgacgccggcgtc
ccggcgctgccgggcggcgcggcgctacgcgactgcctcgccgagatggtccggctgtcg
gagcggctcgccgaggccgagcaggcccaccggctcgcgttcctgcgcccgcccgagctc
ggattcgtcgccgtcgcgcacgactgggccgcgggccgcacgttggaacgggtgctgacc
gacagttccgtggaactgaccgccggcgatttcgtccggtggatgcgccagctcatcgac
atccttgaccagatcgcgcaggtcgctccgatggtgcaggcggacccgggaacgccggac
ggcgcgcgggtgcgccggaccgcccgggcggcgatggacgccgtccgtcgcggggtcgtc
gcgtacgcgatgagcgtctga
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