Frankia casuarinae: Francci3_2646
Help
Entry
Francci3_2646 CDS
T00320
Name
(GenBank) Exodeoxyribonuclease V
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
fra
Frankia casuarinae
Pathway
fra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Francci3_2646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fra03400
]
Francci3_2646
Enzymes [BR:
fra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Francci3_2646
DNA repair and recombination proteins [BR:
fra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Francci3_2646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
UvrD_C_2
HHH_RecD2
AAA_11
Viral_helicase1
SH3_13
AAA_22
Helicase_RecD
AAA_16
SLFN-g3_helicase
AAA_28
Motif
Other DBs
NCBI-ProteinID:
ABD12008
UniProt:
Q2J9N4
LinkDB
All DBs
Position
3121308..3123758
Genome browser
AA seq
816 aa
AA seq
DB search
MPPQRRPGYHATQRATTAAERFVVTLPGMPDEYTTASTTEPDAVGPQARADPQPADPEEV
FAAFCGAGLWPGLGRTTAGRLPAAGITRPDHVDVGRLGTVEGVTGPRARRLADSFRAVAG
TYAVVELLVAADLPARLARGVTDLLGPASADLLRADPWMLLTAADTEIAQADRFARRRGL
QRDDPRRGPAVLTHLLGRAASRAGDTAGPVQAVLRAAAREGVADPSAALTVALDDGRIIT
VGDRIALERYAMAEQSVADGIERLTATAEPLRAGAPRARRRPDDGPGYDGPGYDGLGSVD
DDDPAGRAVSAWAATAPPPTALTFDDDKDDDKDGGDESPLGADGTEGDTNRDAAAAGRGG
PANDGGPANDEVVTGLDELQLAAARAALESGVSVLTGGPGTGKSRTVAAVVRLAWAAEAV
VALAAPTGRAAKRLEELCGAPASTLHRLLQAQGRGSGFARGEHNPIDADLVVVDEASMLD
AELAAALLDACADGTHLMFVGDPAQLPSIGPGQILADLLESGEVPVTELRRLYRQADGGA
IATMAAAVRGGELPPPGPGREVVVVPSGSSGEAAHRTVQLVTNSIPRALGIPVADIQVVT
PVHAGPAGTTALNTALKGTLNPGGGAVSGFDIGDRVVATANHIDVGFANGEIGTVVALGE
RGALRVAFPGGVVEVPAGVLGDLRHGWAVTVHRAQGSEWPAVVAVFPPEAGRMLTRPLIY
TALTRAQAHLSIVAVNGPAIRNAVRSSGGRRRTTLLPALLAGQTAGGFDDPDEDPDEDPD
GGPDGRPDGGSDARRAGGATAGEAARVRDGDERMTV
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgccgccacagcgccgtcccggataccacgctacccagcgggctacaacagcggcggaa
cggttcgtcgttacgcttcccggcatgccggacgagtacacgaccgcttccaccacggag
cccgacgcggtcggcccgcaggcacgagcggacccgcagccagcggaccccgaggaggtc
ttcgccgcgttctgcggggcggggctgtggccggggctgggccgcacgacggccggccgg
ctgcccgcggccgggatcacccggcccgaccacgtcgacgtcggccggttgggcaccgtc
gagggggtcaccgggccgcgggcccggcggctcgccgacagcttccgcgccgtggcgggc
acgtacgcggtcgtcgaactgctcgtcgccgcggatcttccggcccggctcgcgcgcggg
gtgaccgacctgctgggacccgcgtccgccgacctcctgcgggccgatccgtggatgctg
ctgaccgccgccgacaccgagatcgcccaggccgaccggttcgcccgccgccgcggtctg
cagcgcgacgatccgcgccggggcccggcggtactcacccatctgctcggccgggccgcc
tcccgggccggggacaccgcgggccccgtgcaggcggtgctgcgtgccgccgcgcgcgag
ggggtggccgatccgagcgcggcgctgaccgtggcgctcgacgacgggcggatcatcacc
gtcggcgaccggatcgcgctggagcggtacgcgatggccgagcagtccgtcgcggacggc
atcgaacggctgacggcgaccgccgagccgctgcgcgcgggcgcccccagagcccgccgc
cgacccgatgacgggcctgggtacgacgggcctgggtacgacgggttgggatccgtcgac
gacgacgatccggcggggcgggccgtgtccgcatgggccgccaccgccccgcctcctacg
gcgctgacgttcgacgacgacaaggatgacgacaaggacgggggggacgagagccccctc
ggcgccgatggcaccgagggggacacgaaccgggacgccgccgcggcgggccgcggcgga
cccgcaaacgacggcggaccggcaaacgacgaggtggtgaccgggctggacgagctccag
ctcgcggcggcgcgcgccgcgctggagtccggcgtcagtgtgctcaccggtgggccggga
acgggcaagagccgcacggtcgcggccgtcgtacgactggcctgggcggccgaggcggtc
gtcgcactggccgcgccgaccggacgggctgccaaacgcctcgaggagctgtgcggggcg
ccggcgagcaccctgcaccggctgttgcaggcccaggggcgcggcagcgggttcgcgcgc
ggcgagcacaacccgatcgacgccgacctcgtcgtcgtcgacgaggcgtcgatgctcgac
gcggagctcgccgccgcgctgctcgacgcctgcgcggacggcacgcacctgatgttcgtc
ggggacccggcccagctgccgagcatcggaccggggcagatcctcgccgacctgctcgag
tccggtgaggtcccggtgaccgagctgcggcggctgtaccgacaggctgacggcggcgcc
atcgcgacgatggccgccgcggtacgcggcggggagctgccgccgccggggcctggccgg
gaggtcgtggtggtgccgtccggcagctccggcgaggctgcgcatcgcaccgtccagctc
gtcaccaactccatcccccgcgcgctcggcattcccgtcgcggacatccaggtcgtgacc
ccggtgcacgccggtccggcaggcaccacggcgctcaacaccgcgttgaagggcacgctg
aacccgggcggcggcgccgtctccgggttcgacatcggggaccgtgtggtggccacggcg
aaccatatcgacgtcgggttcgccaacggcgaaatcggcaccgtcgtcgcgctgggcgaa
cgcggtgcgctgcgggtcgcgtttcccggcggcgtcgtcgaggtgcccgccggtgtcctc
ggtgatctgcggcacggctgggcggtgacggtgcaccgcgcgcagggcagcgagtggccc
gccgtcgtcgccgtgttcccgccggaggccggccggatgctcacccgtccgctgatctac
acggcgctgacccgggcgcaggcccacctgtcgattgtggccgtgaacggcccggccatc
cgcaacgccgtgcggagctcgggcggacggcgccgcacgacgctgctcccggctctgctc
gccgggcagaccgccggcggcttcgacgatcccgacgaagatcccgacgaagatcccgac
ggggggccggacggcaggcccgatggcggatccgacgcgcggcgggcgggcggcgcgacc
gctggggaggcagcccgcgtacgggacggcgacgaacggatgacagtctga
DBGET
integrated database retrieval system
