Frankia casuarinae: Francci3_3505
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Entry
Francci3_3505 CDS
T00320
Name
(GenBank) sigma 38
KO
K03086
RNA polymerase primary sigma factor
Organism
fra
Frankia casuarinae
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Francci3_3505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fra03021
]
Francci3_3505
Transcription machinery [BR:
fra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Francci3_3505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_25
Motif
Other DBs
NCBI-ProteinID:
ABD12858
UniProt:
Q2J784
LinkDB
All DBs
Position
complement(4185210..4186478)
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AA seq
422 aa
AA seq
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MTLPALELAERTDDNRPRSPRRARRAAPPVRTAPSRSLAAVPDDTDELDVSAVAEVIARG
REAGEISRSELRDVLESADIGIELLPALIARLNAVGIELLDEEEASDDATAASRSTAEHA
GTADLVRMYLREIGKVPLLNAAQEVELSKRVEAGLFAEYKLESVPDLPADLRRDLGLLVK
DGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTY
ATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMP
IEQVVELRRYAQDTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGG
LSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAGRLREF
LD
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgcctgctctggaacttgccgagcgcaccgacgacaaccgcccgcgtagcccg
cggcgtgctcgtcgggccgctcctcctgtccgcaccgctcccagccgttcgctggccgct
gttcccgacgataccgacgagctcgatgtgagcgcggtggccgaggtcatcgcccgtggt
cgcgaggccggcgagatcagccgctccgagttgcgtgatgtgctcgagtccgcggacatc
ggtattgaactgttgcccgctctcatcgcgcgcctcaacgccgttggcatcgaactcctc
gacgaggaggaagcgagcgacgacgccaccgccgccagccggtccaccgccgaacacgcg
ggtaccgccgacctcgtgcgcatgtacctgcgcgagatcggcaaggtgccgctgctcaac
gccgcccaggaggtcgaactctccaagcgggtcgaggcgggcctgttcgctgagtacaag
ctcgagagcgtccccgacctgcccgccgaccttcgtcgtgatctcggtctgctggtcaag
gacggccatgccgccaagcagcagctcgtctcggcgaacctgcggctggtggtctccgtc
gccaagaagtacagcggtcgcgggatgaccctgctggatctggtccaggagggcaacctc
ggtcttatccgcgcggtggagaagttcgactacgccaagggctacaagttctcgacctat
gcgacctggtggatccgccaggccatcggccgggcgctcgccgatcaggcgcggacgatc
cgcatcccggtccacgtggtcgagcagattaacaagatcacccggttgcagcgccagctt
gtctccacgctcggccgtgagccgaccgacgaggagctcgccctcgagctggacatgccg
atcgagcaggtggtggagctgcgccggtatgcgcaggacaccgtcagcctggagacctcg
gtcggtgacgatggtgactccgtgctcggtgacttcatcgaggactccgacgcgacctcc
ccggcggacgccgcctcctacggcgccatgcaggacgagatcgagaacgtcctcggtggc
ctgagcccgcgggagcgcgaggtgatgcggctgcgcttcggtctcgccgacggcaagcag
cacaccctcgccgaggtgggcaaccggctcggcctgacccgtgagcgcatccgtcagatc
gagcgggacacgcttcgggagttgcgcaagcccgccgtcgccggtcggctgcgcgagttc
ctcgactga
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