KEGG   Frankia casuarinae: Francci3_3527
Entry
Francci3_3527     CDS       T00320                                 
Name
(GenBank) ATP dependent helicase, Lhr family
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
fra  Frankia casuarinae
Brite
KEGG Orthology (KO) [BR:fra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fra03400]
    Francci3_3527
Enzymes [BR:fra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Francci3_3527
    5.6.2.6  RNA 3'-5' helicase
     Francci3_3527
DNA repair and recombination proteins [BR:fra03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Francci3_3527
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH3_Lhr WH4_Lhr DEAD WH2_Lhr Helicase_C ResIII AAA_25 Ubiq_cyt_C_chap
Other DBs
NCBI-ProteinID: ABD12880
UniProt: Q2J762
LinkDB
Position
4211793..4216496
AA seq 1567 aa
MNHTGGRLSVPRRRLVNVPSFASPDPPDPLTAFSAPTRSWFGAAFTAATPAQRGAWEAIR
TGGNALVVAPTGSGKTLAAFLWSLDTLARSAPPAEPTRRCRVLYVSPLKALAVDVERNLR
APLAGIRSAAQRLGLPQPDVTVGLRSGDTPAAERRGFGTRPPDVLITTPESLFLILTSAA
RESLRGVRTVIVDEVHAVAGTKRGAHLALSLERLDALLDTPAQRIGLSATVRPVEEAARF
LGGTAPVAVVRPPAAKTLQIDVVVPVEDMTQLGGQLLDGSPDGSAASAPHRASIWPAVEQ
RVLDLVLAHSASIVFANSRRLAERLCARLNELYAERLAAATAADESVAGDGPGEAGRTSP
AALMGASGQGGGTAGWPEIARAHHGSVSREQRAGIEEDLKAGRLPAVVATSSLELGIDMG
AVDLVVQIGSPPSVAAGMQRTGRAGHQVGAASRGVIIPKHRSDLLECAVVAERMRSGAIE
RLRYPRNPLDVLAQQIVAMTAMEDWHVDELGALVRRTATFATLPTSAFEAVLDMLAGRYP
SDTFAELRPRITWDRVTGILTARPGAQRLAVTSGGTIPDRGMFGVFLVGERSSRVGELDE
EMVYESRVGDVVLLGSSSWRIEEITADRVLVTPAPGRPGRLPFWHGDAPGRPAELGRALG
AFLREITRLPAQAAADRVRAAGLDDRATANLLRYLDEQKAAVGRLHDDRTIVVERFRDEI
GDWRLAVHSPFGAPVNAPWALALGARLRERYGVDVQIMHTDDGIVARIPDAAEPPGADLA
LFEPDEIDAIVRAEIGSSALFASRFRECAGRALLLPRRTPGRRTPLWQQRQRSAALLSVA
ATFASFPVVLETMRECLQDVFDVPALAELMREVSARTLRVVEVETPSPSPFASALLFGYV
AAFMYDGDVPLAERRAQVLSLDSSLLAELLGEADLRELIDPAALAQVAAQLTRLAPDRHA
RDVEGVADLLRMLGDLTTEEAVARGATPGWLAELEQTRRALRVRIAGEERWVAIEDAGRL
RDALGVPLPVGVPDAFTEPVRDPLGDLISRYARTHGPFDTEEPAARLGLGTAVVAGVLDG
LVRSGRLVRGELHPDRGGEQWCDAGVLRALRRRSLAALRKEVEAVPPRTLGAFLPAWQSV
TSGRGRGVDGVLRAVEQLQGALIPASAWEQLVLPARVADYSPTMLDELCSAGEVHWAGAG
GLPGDDGWLTLVLADTAPLLLPPPDPEIASGPLHTAILDALTGGAALFFRALSDRMGSLD
DTALATALWDLVWAGRVTNDTLAPLRALLGSAGRPYRAPRPRAARYGRPAMPRRAGPPTA
AGRWSLLPERDTDPTRRAHALAEALLERHGIVTRGAVTGERHPGGFAGVYRVLSAFEDAG
RARRGYFVESLGAAQFAVPGAVDRLRSIAAAQRDAEAAPAWAQPAAGPPSSSSAQAVVLA
AADPANPFGAALPWPTRPGDDADGAAGHRPGRKAGAMVVIIDGELILYVERGGRSLLSWT
EDDHRVAPAVEALARAVRDGLLGRLTVEKADGQTIVGSTLGAALERAGFHPTPRGLRLRS
ISSERRK
NT seq 4704 nt   +upstreamnt  +downstreamnt
atgaaccacaccggcggaaggttgtcggtccctcgacgcagactggtcaacgtgcccagc
ttcgcttcccccgatccgccggatccgctcacggcgttctccgccccgacccggagctgg
ttcggcgcggccttcaccgccgcgacccccgcccagcggggcgcgtgggaggcgattcgc
accggcggcaacgcgctggtcgtcgcacccacgggttcggggaagacactggccgccttc
ctgtggtcgctggacaccctggcccgctcggcgccgccggccgagcccacccggcgctgc
cgggtgctgtacgtcagcccactcaaggcgctggccgtcgacgtcgaacggaacctgcgg
gcaccgctcgcggggatacgctccgccgcgcaacggctcggtctgccccagccggacgtg
accgtgggtctgcggtcgggcgacacccccgccgccgaacgacgcggtttcggcacccgg
ccccccgacgtcctgatcaccaccccggagtcgctcttcctcatcctcaccagtgccgcg
cgggagtcgctgcgcggcgtccggacagtgatcgtcgacgaggtccacgcggtggcgggc
accaagcgcggcgcccacctcgcgctgagcctggagcgtctggacgccctgctggacacc
ccggcccagcggatcggcctgtccgccacggtgcggccggtcgaggaggccgcccgattc
ctgggcggaacggccccggtggcggtagtccgcccgcccgcggccaagaccctccagatc
gacgtcgtggtgccggtcgaggacatgacccagctcggcggacagctcctcgacgggtcc
ccggacggctcggcggcctccgccccgcaccgagcgtcgatctggccggcggtcgagcag
cgtgtcctcgacctcgtgttggctcattccgccagcatcgtcttcgccaactcgcgccgg
ctcgcggagcgactctgcgcccggctgaacgagctgtacgccgagcggctcgccgcggcc
accgccgcggacgaatccgtggccggggacgggccgggggaagccggccggacgtccccc
gcggcgctgatgggcgcctcgggccaaggcggcggcacggcgggctggccggagatcgcg
cgggcccaccacggcagcgtgagccgcgagcaacgggccggaatcgaggaggatctcaag
gctggccggctgcccgcggtcgtcgcgacctccagcctggaactcggcatcgacatggga
gccgtcgacctggtcgtgcagatcgggtccccgccgagcgtcgccgccgggatgcagcgc
accggccgcgcgggccaccaggtcggcgccgccagtcgcggcgtcatcatcccgaagcat
cgcagcgacctgctcgaatgtgccgtggtcgccgagcggatgcgctcgggggcgatcgag
cggctgcggtacccgcgcaaccccctcgacgtgctggcgcagcagatcgtggcaatgacg
gcgatggaggactggcacgttgacgagctcggcgcgctggtccggcgcaccgcgacgttc
gcgacgctgccgacctccgccttcgaggcggtcctggacatgctcgccggccgctacccc
tccgacacgttcgccgagctgcgcccccgcatcacctgggaccgcgtcaccgggatcctc
accgcccgcccgggcgcccagcggctcgccgtgaccagcggaggcaccattcccgaccgg
ggcatgttcggcgtcttcctcgtcggggagcgctccagccgggtcggggaactcgacgag
gagatggtctacgagtcgcgggtcggcgacgtggtgctcctcggctcatccagctggcgc
atcgaggagatcaccgccgaccgggtcctggtgacgccggctccgggacggcccggccgg
ctccccttctggcatggcgacgccccaggccgacccgccgaactcggccgcgcgctcggc
gcgttcctgcgcgagatcaccaggttgccggcgcaggcggcggccgaccgcgtccgggcc
gccggcctcgacgatcgggccaccgccaacctgctgcgctacctcgacgagcagaaggct
gccgtcggccgtctccacgacgatcggacgatcgtcgtggagcgtttccgggacgagatc
ggcgactggcgcctggcggtgcactccccgttcggtgctccggtgaacgcgccctgggcg
ctcgccctgggcgcccggctgcgcgagcggtacggggtcgacgtccagatcatgcacacc
gacgacggcatcgtcgcccggatcccggatgccgccgagccgcccggcgccgatctcgcg
ctgttcgagccggacgagatcgacgcgatcgtacgggcggagatcgggagcagcgccctg
ttcgccagccggttccgcgagtgcgccgggcgggccctgctgctgccccgccggaccccg
gggcggcggaccccgctgtggcagcagcgccagcgcagcgcagcgctgctgtccgtcgcc
gcgacgttcgccagcttccccgtcgtgctggagaccatgcgagagtgcctgcaggacgtg
ttcgacgttccggcgctcgcggagctgatgcgcgaggtgtcggcccgcacgctgcgggtg
gtggaggtggagacgccgtccccgtctccgttcgcctccgccctgctgttcggctacgtc
gccgccttcatgtacgacggggacgtaccgttggccgaacgccgggcgcaggtgctgtcg
ctggacagctccctgctggccgagctcctcggcgaggcggacctgcgggagctgatcgat
ccagcggcgctcgcgcaggtcgccgcccagctcacgcggctcgccccggaccgccacgcc
cgcgatgtcgagggagtggccgacctgctgcgaatgctcggtgacctcacgaccgaggag
gcggtcgcccggggtgccaccccgggctggctcgccgagctcgaacagacccgccgggcc
ctgcgggtccgtatcgccggcgaggagcggtgggtcgcgatcgaggacgccggccggctg
cgcgacgccctgggcgtaccgctgccggtgggagttcccgacgccttcaccgaaccggtg
cgtgaccctctcggcgacctgatctcccgctatgcccgtacccacggaccgttcgacacc
gaggaaccggccgcccggctggggctgggcacggcggtggtcgccggtgtcctggacggg
ctggtccgcagcggccgcctcgtccgcggtgagctgcatcccgaccgcggcggtgagcag
tggtgcgacgcgggcgtgctgcgggcgctgcgacgacgcagccttgccgccctgcgcaag
gaggtcgaggcggtgccgccccggaccctcggtgccttcctgccggcctggcagtcggtc
accagcggacgtggccggggggtggacggtgtgctgcgcgccgtcgagcagctgcagggc
gcgctgatcccggcgagcgcatgggaacagctcgtcctcccggcccgcgtcgccgactac
tcaccgacgatgctcgacgagctgtgctccgccggcgaggtgcactgggctggcgccggc
gggctgcccggggacgacggctggttgaccctggtcctcgccgacaccgcgcccctgctg
ctgcctccgcccgacccggagatcgcctcgggtccgctgcacaccgcgattctcgacgcg
ctcaccggcggggcggccctgttcttccgggcgctgtccgaccggatgggctcgctcgac
gacacggcgctcgctaccgcgctctgggatctcgtctgggcggggcgggtaaccaacgac
accctcgccccgctgcgtgccctgctgggttccgccggccgtccgtaccgtgccccccgt
ccccgggcggcacggtacggacggccggcgatgccgcggcgggccggccccccgacggcc
gccggccgctggtcgctgctgcccgagcgggacaccgacccgacccggcgcgcccacgcg
ctggccgaggcgctgctcgagcgccacggcatcgtcacccgcggcgcggtgaccggcgag
cggcacccgggcgggttcgccggggtctaccgggtcctcagcgccttcgaggacgccggc
cgcgcccgccggggctacttcgtcgagtccctgggcgcggcccagttcgccgtcccggga
gcggtcgatcggctgcgctccatcgccgcggcacagcgggacgccgaggcggccccggcc
tgggcgcagccggcggccggcccaccgagctcatcgtccgcgcaggccgtcgtcctggcc
gcggccgatccggccaacccgttcggtgccgcgctgccctggccgacccgaccgggggat
gacgcggacggcgccgccggccaccggccggggcgcaaggcgggcgcgatggtcgtcatc
atcgacggggaactcatcctctacgtggaacgcgggggccgttccctgctgtcatggacc
gaggacgaccatcgggtggccccggcggtggaggcgttggcccgcgccgtgcgggacggc
ctgctcggcaggctcacggtggagaaggcggacggccagacgatcgtcggcagcaccctg
ggtgccgccctggagcgcgccggtttccacccgaccccgcggggcctgcggctgcggagc
atcagttccgagagaaggaaataa

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