Frankia casuarinae: Francci3_3722
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Entry
Francci3_3722 CDS
T00320
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fra
Frankia casuarinae
Pathway
fra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Francci3_3722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fra03021
]
Francci3_3722
03019 Messenger RNA biogenesis [BR:
fra03019
]
Francci3_3722
Transcription machinery [BR:
fra03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Francci3_3722
Messenger RNA biogenesis [BR:
fra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Francci3_3722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABD13074
UniProt:
Q2J6L8
LinkDB
All DBs
Position
complement(4454488..4456584)
Genome browser
AA seq
698 aa
AA seq
DB search
MTRRRRQGTGLSAMLLPELQAMASSLGIQGVGRLRKGQLIAAIQNVQNNESAAVTPVAAA
PATSSASAASTASTALAPPPPAESGPASPAGPVPAASETSPAPRVSRQAAGSDGTATRTR
SRRGASRAAASPAAEQPTLPETAAGDTVVETRAGSVVDARAGSAASAVASAQPTVSAQPT
GAPASAPPAAASHRQTDAGPRSREDRRDRSADNGRVSASDRQGGEAGGERATADRQGADR
RSGTDRQSADRPSRVDRTQQGDRSGAERSGGDRPGQGGQGGQGEDDFAARGRRGRFRERG
RNRGRGGQAGPSENEPVLREDDVLVPVAGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVR
RNGLRRGDAITGVVRAPQEGEQRRDKYNALVRLDTINGMEPEEARGRPEFTKLTPLYPQE
RLRLETEPHMLTTRVIDLVMPIGKGQRALIVSPPKAGKTMVLQSIANAITTNNPEVHLMV
VLIDERPEEVTDMQRSVKGEVIASTFDRPPADHTNVAELSIERAKRLVELGHDVVVLLDS
ITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATALVETGST
MDTVIFEEFKGTGNAELKLDRKIADKRIFPAVDVDASGTRKEEILLAPDELVIMHKLRRV
LHTRETQQALELLLDRLKQTRTNYEFLMQIAKTAPPQD
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgacgccgccggcagggcaccggtctgtccgcgatgctgctccccgagctgcag
gccatggcctcgtccctggggatccagggcgtgggtcggctgcgcaagggccagctcatc
gccgcgatccagaacgtgcagaacaacgagtccgcggccgtgacgcccgtcgcggcggcc
ccagcgacttcttcggcctccgcagcctccacggcctccacggcccttgcaccgccgccc
ccggcggagtcggggccggcctcgcccgccggaccggttccggccgcgagcgagacatcc
cccgcgccgcgggtgtcccggcaggctgccggctcggacggcaccgctacccgcacccgt
tcccgccgtggagcctctcgggcggcggcgagccccgccgccgagcagccgaccctgccc
gaaacggcggctggggacacggtcgtggagacccgggccggatcggttgtggacgcccgg
gccggatcggccgcctccgccgtggcttcggcccagccgaccgtgtccgcccagccgacc
ggggcgcccgcgtcggctccgccggccgccgcgtcccaccgccagaccgatgccggtccc
cggagtcgggaggaccgccgggatcgttccgccgacaacggccgggtgagcgcgagtgac
cgtcagggcggtgaggccggcggcgagcgtgccacggcggaccgccagggcgcggaccgt
cgctccggtacggaccgtcagtccgctgatcgtcccagccgcgtggatcgcacccagcag
ggtgaccggtccggggcagagcgttccggcggcgaccggcccgggcagggagggcaaggg
gggcaaggcgaggacgacttcgccgcccgtggccggcggggccgcttccgggaacgcggt
cgtaaccgcggtcgcggcgggcaggccggcccgagcgagaacgagccggtcctgcgcgag
gacgacgtcctggtccccgtcgccggcattctcgacgttctggataactacgccttcgtg
cggaccagcgggtacctgaccggcccgaccgacgtctatgtcagcctcgcccaggtgcgt
cgcaacgggctgcgccgcggtgacgccatcaccggtgtcgtccgcgccccgcaagagggc
gagcagcgccgggacaagtacaacgcgctggtccggctcgacaccatcaacgggatggag
cccgaggaggcacgcggccggccggagttcaccaagctgactccgctctacccccaggag
cggctgcggctggagaccgagccccacatgctgaccacgcgggtcatcgacctcgtgatg
ccgatcggcaaggggcagcgggccctgatcgtcagcccgcccaaggcgggtaagacgatg
gtgctgcagtccatcgcgaacgcgatcacgacgaataacccggaagtccacctcatggtc
gtgctcatcgatgagcggccggaggaggtcaccgatatgcagcggtcggtcaagggcgag
gtcatcgcgtccaccttcgaccgtccaccggccgaccacaccaatgtcgccgagctgtcc
atcgagcgggccaagcgtctggtcgagttgggccacgacgtcgtcgtgctgctcgactcg
atcacccggttgggccgtgcctacaacctggcggccccggcctccggtcgtatcctgtcc
ggcggtgtcgactcgacggcgctctacccgccgaagcggttcctcggcgcggcccgcaac
atcgagaacggcgggtctctgacgatcattgcgacggcgctggtggagaccggttcgacg
atggacaccgtgatctttgaggagttcaagggaaccggcaacgccgagctcaagctcgat
cgcaagattgccgacaagcggatcttccccgcggtggatgtcgacgcctccggtacccgc
aaggaggagatcctgcttgccccggacgagctcgtgatcatgcacaagctgcgtcgcgtg
ctccataccagggagacccagcaggccctcgagctcctgctcgatcggctcaagcagacc
aggacgaattacgagttcctgatgcagatcgccaagaccgcaccgcctcaggattag
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