Frankia casuarinae: Francci3_3755
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Entry
Francci3_3755 CDS
T00320
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K03090
RNA polymerase sigma-B factor
Organism
fra
Frankia casuarinae
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fra03021
]
Francci3_3755
Transcription machinery [BR:
fra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Francci3_3755
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_5
MarR_2
DUF7343
MarR
HTH_3
Sigma70_ECF
HTH_Crp_2
GerE
HTH_24
Motif
Other DBs
NCBI-ProteinID:
ABD13106
UniProt:
Q2J6I6
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All DBs
Position
4503677..4504693
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AA seq
338 aa
AA seq
DB search
MTSTGRTPTPPRTVPDRDVADRNVADRDPVSTVDPVAALSQRGSGLDDQPGIDSDLGPEV
TTQAPPNPAVDGPAIDGESDRPERAHSPDRALARTLFVRLAELPEDDPERSAVRDQLVRM
HLPLVEYLARRFRNRGEPLDDLVQVATIGLIKSVDRFDPERGVEFSTYATPTIVGEIKRH
FRDKGWAIRVPRRLQELKLSLTKATSELSQTLGRSPTVSEIARHLQMSEDDVLEGLESAN
AYSAVSLDAPDSGDDEAPAVADTLGVQDESLEGVEYRESLKPLLEKLPAREKRILLLRFF
GNMTQSQIATELGISQMHVSRLLARTLAQLRRGLLEDG
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtcgaccgggaggacgccgaccccaccgcgcacggtacctgatcgcgacgtagcc
gatcgcaacgtagccgatcgcgacccggtgtccacggtggacccggtagcggcgttgagc
caacggggatccgggctcgacgaccagccggggatcgacagcgatctcggccccgaggtg
acgacccaggcgccaccgaacccggcggtggacggtccggcgatcgacggggagagcgat
cggcccgagcgcgcgcactcgcccgaccgggccctggcccgcacgctgttcgtccgcctc
gccgagctacccgaggacgatcccgaacgctccgccgtccgcgatcagctcgtccggatg
cacctaccgctggtggagtacctcgcccgccgcttccgtaaccggggcgagccgctcgac
gacctcgtccaggtggccaccatcggattgatcaaatcggtggaccggttcgatccggaa
cgtggggtggagttctcgacctacgccaccccgaccattgtcggtgagatcaagcggcac
ttccgggacaagggctgggccatccgggtcccccgccgccttcaggagctcaaactctcc
ctgacgaaggcgacctccgagctctcccagacgctgggccgctcccccacggtgagcgag
atcgcccggcatctgcagatgagcgaagatgacgtcctcgaggggctggagtcggcgaac
gcctactcggcggtctccctcgacgcgccggactccggcgacgacgaggcgcccgccgtc
gcggacaccctcggcgtccaggacgagtccctggagggcgtcgagtaccgcgagtccctc
aagccgctgttggagaagctccctgcgcgggagaagcgcatcctgctgctgcggttcttc
ggcaacatgacccagtcccagatcgcgaccgagctcggcatctcccagatgcacgtttcc
cggctcctggcccggaccctggcccagctgcggcgcggcctgctcgaggacggctga
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