Frankia casuarinae: Francci3_3799
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Entry
Francci3_3799 CDS
T00320
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fra
Frankia casuarinae
Pathway
fra03420
Nucleotide excision repair
fra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Francci3_3799
03430 Mismatch repair
Francci3_3799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fra03400
]
Francci3_3799
Enzymes [BR:
fra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Francci3_3799
DNA repair and recombination proteins [BR:
fra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Francci3_3799
MMR (mismatch excision repair)
Other MMR factors
Francci3_3799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABD13149
UniProt:
Q2J6E3
LinkDB
All DBs
Position
complement(4552518..4555910)
Genome browser
AA seq
1130 aa
AA seq
DB search
MNPRVEQPGAGVHVTIPRQPFLPGFDGDVDGDPAGGVAGPRLDPDDLRDLLEVPYTDEQI
AAATAPLEPGVIIAGAGSGKTSVMAARVVWLVATGQVRPDQVLGLTFTTKAAAELSGRVR
LALRKASAGAGPGGPAADGEVDGEPTVATYHAFAGRLVVDNALRLGLEPDLQLISGAARY
QLAARVARSHGGKVEALTRSLGALVGELVALDAEMSEHLVDPADLVAFDGALLAEIDAAL
RRAEQRRGTRGVRRELRRCAAAARGRRELAALVAEYRAARRERDVLDFGDQVTCAARLAE
TMPEVGRAERARAAVVLLDEYQDTSVAQRRMLTGLFGGGHPVTAVGDPCQAIYGWRGASV
ANLDHFPTHFPGADGTPAAVYELSVNQRSGGRLLRLANTVAAQLRARHRVVELRPRPDVA
DQGEAVVALHVSWADEVAWIAGQLRRVVDAGTAPGDIAVLVRARGDIPALFTAMQAAGLP
VEVVGLTGLLIVPEVAEIVAMLEVLDSPTANAALVRLLTGPRVRLGPRDLAALGRHAREA
ARVPDPVGDPDLPGRSDPLAEAVADVDPADVVALSDVLDDPGPQMSAPGRARVRRLAAEI
AALRGHVGEGLLDLLHRVVATIGLDVELTATEVAVRARRQENVAAFLDVAAGFTDPDGTN
SLPAFLGFLRAAREHERGLDVAGPSGADAIALMTMHRSKGLEWEVVAVPNLTSKVFPDLT
VRDQWTTSPGVLPIPLRGDADDLPAFTVCAEKAALDAFRADARQYAEREERRLAYVAVTR
AKSLLFASGHWWGPTQKTPRGASVFLDELAEHARTGGGLVDVWAPEPAERTNPALATPER
FAWPIPYEPEPYARRLAAAEGVMARLAALSVPGASAEPAGEPFVDGPAGMTAAERVLLAE
LDREARLLLAEERAARLARTDVALPASLTASQIVRLRADPEAFARELVRPLPRRPVAAAR
RGTRFHAWVEEIFDYRALIDTEDLPGAADAELTDDDLRSLQQAFLRTAYGARRPFAIEAP
FELRLAGRIVRGRIDAVYDLGGGRWEVVDWKTGRSDADDLQLGIYRLAWARLRGVDPSAV
DAAFLYVRTGAVVRPPTLSEEELADLLASPSTGPAAGQARGSARSTDSAR
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccgcgggtggagcagccgggcgcgggcgtccacgtgacgattccccgccagccg
ttcctgcccggtttcgacggcgacgtcgacggtgacccggcgggcggcgtcgccggtccc
cggctcgacccggacgacctgcgcgacctgctggaggtcccgtataccgacgagcagatc
gccgcggccaccgctccgctcgaaccgggggtcatcatcgcgggtgcgggatccggcaag
acctcggtgatggccgcgcgggtggtctggctcgtcgccaccgggcaggtgcggcccgac
caggtgctcggactgacctttacgacgaaggcggcggcggagctgtccggccgggtgcgg
ctggcgttgcgcaaggcgtcggctggggcgggcccgggtggaccggccgcggacggcgag
gtggacggggagccgaccgtcgccacctaccatgccttcgccgggcggctggtcgtcgac
aacgccctgcggctggggctggagccggacctccagctgatctccggcgcggcccgctac
cagctcgccgcccgggtcgcccgctcccacggcgggaaggtggaggcgctgacacgttcg
ctgggcgcgctcgtcggcgagctcgtcgcgctggacgccgagatgagcgagcacctggtc
gatccggcggacctcgtcgcgttcgacggcgcgctgctcgccgagatcgacgcggcgctg
cggcgtgccgagcagcggcggggcacccggggcgtccgccgggagctacgccggtgcgcg
gccgccgcccgggggcgccgggagctggccgccctggtggcggagtaccgggcggcccgg
cgggaacgcgacgtcctggactttggtgaccaggtcacctgtgccgcgaggctcgccgag
accatgccggaggtcggtcgggccgagcgggcgcgggccgctgtcgtcctgctcgacgag
taccaggacacctcggtggcccagcggcggatgctcaccggcctgttcggcggcgggcat
ccggtcaccgccgtcggcgacccctgccaggcgatctacggctggcgcggggcgtcggtg
gcgaacctcgaccacttccccacgcacttccccggggccgacggcacgcccgcggccgtc
tacgaactgtcggtgaaccagcgcagcggcggccggctgctccgcctcgccaacaccgtc
gccgcacagctgcgggcccgtcaccgcgtcgtcgagctccgcccgcgacccgacgtggct
gaccagggcgaggcggtggtcgcgttgcacgtcagctgggccgacgaggtggcctggatc
gccggccagctccgccgggtggtcgacgccggcaccgctcccggcgacatcgccgtgctg
gtccgggcccgtggcgacatccccgcgctgtttaccgcgatgcaggcggccgggctgccc
gtcgaggtcgtcgggctgaccgggctgctcatcgtcccggaggtcgccgagatcgtggcc
atgctggaggtgctcgactcgccgacggcgaacgccgcgctcgtccggctgctcacgggg
ccgcgggtgcggctcggcccccgggatctcgccgcgctcggccgccacgcgcgtgaggcg
gcgcgggtcccggacccggtcggcgatccggacctgccgggacggtccgatccacttgcc
gaggcggtcgccgacgtcgaccccgccgacgtcgtcgccctgtcggacgtcctcgacgac
cccgggccgcagatgtccgcgccggggcgcgcccgggtgcgtcggcttgccgccgagatc
gccgcgctgcgtgggcacgtcggcgagggcctgctcgacctgctgcaccgggtggtcgcg
acgatcgggctggacgtggagctcacggcgaccgaggtggcggtgcgggcccggcgccag
gagaacgtcgcggccttcctggatgtggccgcgggcttcaccgatcccgacggcacgaac
tccctgcccgcgttcctcggattcctccgggcggcgcgggagcacgagcggggtctcgac
gtcgccggcccgtccggggccgacgcgatcgccctgatgacgatgcatcgctccaagggc
ctggaatgggaggtcgtcgccgtcccgaacctgaccagcaaggtgttccctgacctgacc
gtgcgcgaccagtggaccacctcgccgggcgtgctgccgatcccgctgcgcggcgatgcc
gacgatctgccggcgttcacggtctgcgccgagaaggccgccctggacgccttccgggcc
gatgcccgtcagtacgccgagcgggaggaacgccggctcgcctacgttgcggtcacccgg
gcgaagtcgctgctgttcgcgagcgggcactggtgggggcccacccagaagaccccacgc
ggtgcctcggtgttcctcgacgagctcgccgagcacgcccgcaccggcggtgggctggtc
gacgtctgggcgccggagccggcggagcgtaccaacccggcgctggcgacgccggaacgg
ttcgcctggccgatcccctacgagccggagccgtacgcccggcgcctcgccgcggccgag
ggggtcatggcgcggctggccgcgttgagcgtaccgggggcgtcggcggaaccggccggg
gaaccgttcgtcgacggtccggccgggatgacggcggccgagcgcgtcctgctcgccgag
ctcgaccgggaggcccggctgctgctcgccgaggaacgcgcggcacgcctcgcgcggacc
gatgtcgccctgccggcgagcctcaccgcgtcccagatcgtccggctgcgcgcggacccg
gaggcgttcgcccgtgagctggtccggccgctgccgcgccgtccagtggccgcggcccgt
cgcggcacccggttccacgcctgggttgaggagattttcgactaccgtgcactgatcgac
accgaggatctgcccggcgcggccgacgcggagctcaccgacgacgatctgcgctcgctg
cagcaggcgtttctgcgtaccgcgtacggtgcccggcggccattcgcgatcgaggcaccc
ttcgagctccgcctcgccgggcggatcgtgcgcggtcgcatcgacgctgtctacgacctc
ggcggcggtcgatgggaggtggtcgattggaagaccggccggtccgatgccgacgatctt
cagctcgggatctaccggctggcctgggcccgcctgcggggcgtcgacccgagtgcggtc
gacgccgccttcctgtacgtgcgtaccggcgccgttgtccggcccccgacgttgtccgag
gaggagctcgccgacctgctcgcgagtccgagcaccgggcccgccgcgggtcaggcccgc
gggtcggcgaggtcgacggacagcgccaggtga
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