Frankia casuarinae: Francci3_3926
Help
Entry
Francci3_3926 CDS
T00320
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fra
Frankia casuarinae
Pathway
fra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Francci3_3926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fra03400
]
Francci3_3926
Enzymes [BR:
fra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Francci3_3926
DNA repair and recombination proteins [BR:
fra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Francci3_3926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ABD13276
UniProt:
Q2J616
LinkDB
All DBs
Position
4695686..4699312
Genome browser
AA seq
1208 aa
AA seq
DB search
MTLAPLLDALIARPGGDPALGRAIGAVGEPVLDLAGPAALRPFAAAALAVGADRPVLAVV
ATGREAEDLASALGSLLGPDVVTVFPSWETLPHERLSPRADTVGQRLAVLRRLAHPASTG
RPPLRIVVASIRAVLQPQVAGLGELAPVTLAEGDTADLDGVVTRLVDIAYHRVDLVERRG
EIAVRGGILDVFPPTEEHPLRVEFFGDEVEDIRRFSVADQRALPEDDGATGGGRVLFAPP
CSELLLTAQVRARAADLATRHPELLDLLDKIADGIPVEGMEALAPVLVDAMSLLLDDLPA
GTHVLVCDPERVRSRASELVRTSQEFLDASWSVAALGGGAPIDLGAAAYRSIIEVRERAE
DLGLPWWSVTPFMSTPAGSDREPAGTGLTGAAYDGTEYGDNYGDNYGDNTVVASLRPAPI
YHGDTAAVIADVKGWLAESWRVLLVTEGHGPAQRLVEMLRDADLGAGLAEEATLTPGVAI
VTCGRLATGFTSDTLRLAVLTESDIAGARGVSTKDMRRMPSRRRKGIDPLALLPGDMVVH
DAHGVGRYVEMVTRTVAGAKREYLLLEYARGDRLYVPTDQLEQITRYVGGDAPSLDRIGG
ADWAKRKSRARRAVKEIAGELIRLYSARMAAPGHAFAPDSPWQRELEDAFPFRETPDQLA
AIDEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFQ
TFSERYAAFPVVVKAMSRFNSPAEHKAVQEGLATGSVDVVIGTHRLLSGENRFKDLGLVI
VDEEQRFGVEHKEQLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHPVL
TSVAAYDARQVAAAIRRELLREGQVFFIHNRVETIDRAAARLRDLVPEARIATAHGQLHE
DALEQVMVSFWEKKFDVLVCTTIVESGLDISNANTLIVERADVFGLSQLHQLRGRVGRGR
DRAYAYFLYPPDKPLTETAHDRLATIAQHNDLGAGMAVAMKDLEIRGAGNLLGGEQSGHI
ASVGFDMYVRMVGEAVAEYRREGVEEPPEVKVELPVDASLPHDYVPSERLRLDAYRRLAG
AATDADIDEVRGELVDRFGPVPEPVENLLAVAGLRVLARRFGVTEIITAGRQIRFAPLEL
RESQTLRLTRLYRGAVVKPAVRTVLVPAPTETGRIGSRPLRDRALLVWVGQLLHAVAGDS
VAAAAASI
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcgcgccgttgctcgacgcgctgatcgcccgtcccggcggggaccctgccctg
ggccgggcgatcggcgcggtcggtgaaccggtcctcgacctcgctggtcccgcggcgttg
cggcccttcgccgccgcggccctggcggtcggggccgaccggccggtcctcgctgtcgtg
gctaccggccgggaggccgaggatctggcgtcggcgctcggcagcctgctcggtcccgat
gtggtcacggtcttcccgagctgggagaccctgccccacgagcggctgtccccccgggct
gacacggtcgggcagcgcctcgccgtgctgcgccggctcgcgcatccggcgagcaccggt
cggccgccactgcggatcgtggtcgcgtcgatccgtgcggtgttgcaaccccaggtggcc
gggctcggcgagctcgcaccggtcaccctcgccgagggcgatacggccgacctcgacggc
gtggtgacgcggctggtggacatcgcttatcaccgggtggacctggtcgagcggcgcggc
gagatcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccgaggaacatccgctg
cgggtcgagttcttcggcgatgaagtcgaggacatccgccggttctccgtggcggaccag
cgggcgctaccggaggatgatggcgcgaccggtggtggccgtgtcctgttcgcgccgccg
tgcagcgaactgctactgaccgcgcaggtgcgggcgcgggccgcggacctcgcgacgcgc
cacccggagctgctggacctgctcgacaagatcgccgacggcatccccgtggaggggatg
gaggcgctcgccccggtactcgtcgacgccatgtcactactcctggacgatctgccggcc
ggcacccacgtgctggtctgcgatcccgaacgggtccgttcgcgggcgagcgaactggtg
cgcacgagccaggagttcctcgacgcgtcgtggagcgtcgcggcgctgggtggcggcgcg
ccgatcgatctcggcgcggccgcctaccgatcgatcatcgaggtccgcgagcgtgcggag
gatctcggcctgccgtggtggtcggtcactcccttcatgtcgaccccggcaggcagcgac
cgggaaccggcgggcaccgggctgacgggcgccgcctacgacgggaccgagtacggcgac
aactacggcgacaactacggcgacaacacggtggtcgccagcctccggcccgcgccgatc
taccacggggacaccgcggcggtcatcgccgacgtcaagggctggctcgccgagtcctgg
cgagtgctgctggtcaccgaggggcacggtccggcgcagcgcctggtggagatgctgcgc
gacgccgacctgggcgccggcctcgccgaggaggccacgctcactccgggcgtcgccata
gtcacctgcggtcggctcgccaccggcttcaccagcgatactttgcgcctcgccgttctt
actgaaagcgacatcgcgggtgcccgcggggtgagcacgaaggacatgcggcgcatgccg
agccggcggcgcaagggcatcgatccgctcgccctgctccccggggacatggtggtccac
gacgcgcacggcgtcggccgctacgtcgagatggtcaccaggaccgtcgcgggcgccaag
cgggagtatcttctgctggagtacgcccggggcgaccgactgtatgtgccgaccgaccag
cttgaacagatcacccggtatgtcgggggtgacgcgccgagcctggaccgcatcggcggc
gccgactgggccaagcgcaagagtcgggcccgcagggccgtcaaggagatcgccggtgag
ctgatccggctctacagcgcccggatggctgctcccgggcatgccttcgctcccgacagt
ccctggcagcgtgagctggaggacgccttcccgttccgagagacacccgatcagctcgcc
gccatcgacgaggtcaaggccgacatggagaagccggtcccgatggaccgggtaatctgc
ggcgacgtcggctacggcaagaccgagatcgcggtgcgggccgcgttcaaggcggtgcag
gacggcaagcaggtcgcggtgctggtgcccacgacgctgctggtccagcagcacttccag
accttctccgagcgttacgccgcattcccggtggtggtgaaggcgatgagccggttcaac
tcgcccgccgaacacaaggcggtgcaggaggggctcgctaccggcagtgtcgacgtggtc
atcggcacccaccggctgctgtccggggagaaccgcttcaaggatctcggcctggtgatc
gtcgacgaggagcagcgcttcggtgtcgagcacaaggagcagctcaagaagatgcgcacg
gcggtggacgtgctcacgatgagcgccacaccgatcccccgcacgctggagatgtcgatc
accggcatccgggagctgtcgaccatcgacactccgcccgaggagcggcacccggtgctg
acctcggtcgccgcctacgacgcccgtcaggtggccgcggcgatccgccgggagctgctg
cgcgaggggcaggtcttcttcatccacaaccgggtggagacgatcgaccgggccgccgcc
cggctgcgcgatctggttcccgaggcgcggatcgccaccgcccacggccagctgcacgag
gacgcgcttgagcaggtcatggtctccttctgggagaagaagttcgacgtgctggtctgc
acgacgatcgtggagtcgggcctggacatctccaacgccaacaccctcatcgtcgagcgg
gccgacgtgttcggcctgtcccagctgcaccagctgcgcggccgggtcgggcggggccgg
gaccgggcgtacgcctacttcctctacccgccggacaagccgctgaccgagaccgcccac
gaccggctcgccacgatcgcccagcacaacgaccttggtgccggaatggccgtggccatg
aaggacctggagatccggggagcgggcaacctgctcggcggcgagcagtccgggcacatc
gcctcggtcgggttcgacatgtacgtgcggatggtcggcgaagcggtggccgagtaccgc
agggagggggtcgaggagcccccggaggtcaaggtcgagctgccggtcgacgcgagcctg
ccgcatgactacgtgccgagcgagcggctgcggctggatgcctaccggcggctggccggc
gccgccacggacgccgacatcgacgaggtgcgtggcgagctcgtggaccggttcggtccg
gtgcccgaaccggtcgagaacctgctggccgtcgcgggcctgcgggtgcttgcccggcgc
ttcggcgtcacggagatcatcaccgccggtcgccagatccggttcgctccgctggagctg
cgggagagtcagacactccggctgacccggctctaccggggcgccgtggtcaaaccggcg
gtgcggaccgtactcgttcccgcgccgaccgagacggggcgcatcggttcccggccattg
cgggaccgggccctgctcgtctgggtcggccagctcctgcatgcggtcgcgggcgactcg
gtcgccgccgcggcggcctcgatctga
DBGET
integrated database retrieval system
