Frankia casuarinae: Francci3_4168
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Entry
Francci3_4168 CDS
T00320
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fra
Frankia casuarinae
Pathway
fra03030
DNA replication
fra03430
Mismatch repair
fra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Francci3_4168
03430 Mismatch repair
Francci3_4168
03440 Homologous recombination
Francci3_4168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fra03032
]
Francci3_4168
03400 DNA repair and recombination proteins [BR:
fra03400
]
Francci3_4168
Enzymes [BR:
fra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Francci3_4168
DNA replication proteins [BR:
fra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Francci3_4168
DNA repair and recombination proteins [BR:
fra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Francci3_4168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PAC2
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
ABD13516
UniProt:
Q2J5C6
LinkDB
All DBs
Position
complement(4969181..4972930)
Genome browser
AA seq
1249 aa
AA seq
DB search
MPTDSFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKSA
GVKPIIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGAYTHMTMLAANAAG
LRNLFRLSSIASIEGYYRKPRMDHELVSQYSEGIIATTGCPSGEVQTRLRLGQFDKALAA
AATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQAGSH
EVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVESYDD
VFKFVDRMPRYPVPAGETQLSWLRKEIDRGLTWRFPAGVPADVVERVDYEVGVIDKMGFP
AYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHALIFERFLNPERIS
PPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSCRVLGYDYALGDK
ISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVIDTARGLEGLTRGT
GVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDCLGLRNLTVIGDA
IEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLLRLMAPTKFGDIA
AVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETYHLVVYQEQVMAI
ARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAVQALWDVLVPFSG
YGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYLAETRRMGIQVLP
PDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESFADFLQKVDIGVC
NKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFDLFGDGGAGEEEE
SPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHRDTRIVDLAEAND
GTTVQIAGIISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFPQSYEVHSYALATDAVIS
VRGRINEREGSVSLFAQDLTVVDVATHVNGPPVVITLPSHKITPPLVDDLKLVLTTHPGT
TPVHLRLEGPQNTHLLLLELQVQASSSLLGDLKALLGALLHWAEAGRGGAVSGGRSDGQG
EFGEGSRQPVPEVGIDAQFVVAAADVLHERVPGADDLCGAEAFQAAHRP
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgccgacggattcttttgttcacctccatgtgcacactgagtattcgatgctggacggt
gcggcgaaaacgggcctgcttttcaaggaagcggcgaagttggggatgccggctgtcggg
atgaccgaccacggtaacatgttcggtgcctacgaattttatcagggtgcgaagtccgcg
ggtgtcaagccgatcatcgggatcgaggcgtacctggcgcccgagtcgcgccaccacaag
cggcctgtcctgtggggggaacgctcgcagcgcgacgtcgaccctgcgggtgagggcggt
gacgtgtccggtggcggcgcctacacccacatgacgatgctcgcagccaacgccgccggg
ctgcgcaacctgttccggctgtcgtcgatcgcgtcgatcgagggctactaccgcaagccg
cggatggaccacgagctggtctcccagtactccgaagggatcatcgcgaccacgggctgt
ccgtcaggtgaggtgcagacccggcttcgtctgggccagttcgacaaggcgctcgcggca
gcggccacctaccaggaggtcttcggcgcggacaacttcttcctggagttgatggatcac
ggtttgccgatcgagcgcagcgtccgccaggggctgctcgacatcggcgacaagctgggg
cttcgcccgctggccacgaacgattcgcactatgtgacccaggatcaggcgggaagccac
gaggtgctgctgtgcgtcggcaccggtaaaaaactcgacgatccgacccgtttcaaattc
gacggatcgggatattatctcaagtcttcggaggaaatgcgcaacttgtgggacagtgag
gtccccggggcctgcgacagctctctgcttatcgccgagcgcgtcgagtcctacgacgat
gttttcaagtttgtggaccggatgccgcggtaccctgtccccgcgggtgagacgcagctg
tcctggctgcgcaaggaaatcgaccgcggactgacgtggcgcttccctgcgggcgtgccc
gccgatgtggtcgagcgcgtcgactacgaggtcggcgtgatcgacaagatgggtttcccg
gcttacttcctggtcgtcgccgacatctgcaagttcgcgagagatcggggcatcgggctg
ggtccggggcgtggatcggcgaccgggtcgatgatcgcctacatcctgggtataaccgag
ctgaacccgatcgagcacgcgctgatcttcgagcggttcctcaacccggagcggatcagc
ccgccggatatcgacctggacttcgacgaacgtcgacgcggtgaggtgatccgctacatc
accgagcagtacggcgaggaccgcgtcgcgcagatcaacaccttcggcacgatcaaggcc
aaggccgcgatcaaggactcgtgccgggtgctgggttacgactacgccctcggcgacaag
atctcgaaggcgatgccgccggatgtgatgggccagggcatcccgctggccgggatcttc
gacccgaaccatgagcggtacggtgaggccgccgaggtccgggcccagtacgagaccgac
accaaggttcggaaggtcatcgacaccgcgcgggggctggaggggctcacccgcggcact
ggtgtccacgccgccggggtcatcctgtgctcggagccgctgctggatgtcctgccgatc
catcgccgcgacaatgacggcgcgatcatcaccgggttcccgtttcctcagtgcgaggag
atgggcctgctcaagatggactgcctcgggctgcggaacctcaccgtcatcggtgacgcg
atcgaggccgtcaagcgtaaccgcaacgtcgacatcgacctgtccaccctccccttggag
gacgccaaggccttcgagttgctcgcccgcggcgacacgctcggggtgttccagctcgac
ggcggaccgatgcgtaacctgctgcgcctgatggcaccgacgaagttcggcgacatcgcc
gccgtgctcgcgctctaccggcccggcccgatggcggccaacagccacatcgagtacgca
gaccgcaagaacggccgcaaggagatcctcccgatccatcccgagctcgccgaggcgctg
gagcccatcctcggcgagacctaccacctggtggtctaccaggagcaggtcatggccatc
gcccgggagctggccggctacagcctcggcggcgccgacctgctgcgccgcgcgatgggt
aagaagaagaaggagatcctggacaaggagttcgctcggttctccgccgggatgaaggag
aggggctacaccgacgcggcggtccaggcgctgtgggacgtgcttgtcccgttctccggc
tacgggttcaacaagtcccacaccgctgggtacggtgtcgtgtcgttctggacggcctac
ctcaaggccaactacccggccgagttcatggcggcgctgctgacgtccgtcggtgacgac
aaggacaagatggcggtgtacctggcggagacccgccggatgggtatccaggtcctgccc
cccgacgtcaacgagtcggacctgcggttcggtgcggtcggggactcgatccgcttcggc
ctgggggccgtccgtaatgtgggggagaacgtcgtcgcctcgatagccgccgcccggcgg
aggaagggcgcgtatgagtcgttcgccgacttcctgcagaaggtcgacatcggggtgtgc
aacaagcgcaccatcgactcgctgatcaaggccggggcgttcgactcgctgggccatcac
cgccgggtgctggtcaacgtacacgagaacgcgatcgacgcggtgatcatcacgaagcgg
gccgaggccatcggccagttcgacctgttcggcgacgggggcgccggcgaggaggaggag
agcccggggctaggactcgacctggacctgtccggccccgaatggccgaagaaggagctg
ctggctcaggaacgcgacatgctcggcctgtacgtgtcctcgcatccgctcgaaggcgcc
gagcgggcgctggatcgccaccgcgacacccggatcgtcgacctcgccgaggccaacgac
gggacgaccgtacagatcgccggtatcatcagcaagatcgaccggcggatcaacaagaac
accgccaaggcgtgggcgatcgtgaccgtcgaggatctcgatgcctccgtcgaggtgctg
ttcttcccccagtcctacgaggtccattcgtacgcgctcgcgaccgacgcggtcatctcg
gtgcggggcaggatcaacgagcgggaggggtcggtctcgctgttcgcccaggacctgacg
gtggtcgatgtcgcgacgcacgtgaacgggccgccggtcgtcatcactctgccgtcacac
aagatcacaccaccgctggtcgatgacctcaaactcgtcctgacgacccatcccgggaca
actccggtgcacctgcgtctcgaaggcccgcagaacacgcatctgctcctgctcgaactc
caggtgcaggcgagtagttcgctgctcggggacctcaaggccctgctgggggcgctgttg
cattgggcggaggcggggcgtggtggagccgtctcgggtgggcggtcagatggccagggt
gagttcggtgaaggcagccgtcagccggttccggaggtcggcatcgacgcccagttcgta
gtggccgcggcggatgttctgcacgaacgcgtgcccggagccgatgatctgtgcggagcg
gaggcgtttcaggccgcgcatcggccgtag
DBGET
integrated database retrieval system
