Fretibacter rubidus: AB6B37_04670
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Entry
AB6B37_04670 CDS
T10733
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
frb Fretibacter rubidus
Pathway
frb03410
Base excision repair
frb03430
Mismatch repair
frb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
frb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB6B37_04670 (recJ)
03430 Mismatch repair
AB6B37_04670 (recJ)
03440 Homologous recombination
AB6B37_04670 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
frb03400
]
AB6B37_04670 (recJ)
DNA repair and recombination proteins [BR:
frb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AB6B37_04670 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AB6B37_04670 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB6B37_04670 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
XER21261
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Position
984707..986482
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AA seq
591 aa
AA seq
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MDDGLPYCYGVQRSARGLAWQWRCGDDDAVSEMVARASVDDLTARLLVGRGVSPEEAAKF
LAPTLRDYLPNPSSLADMDKAANAIVSAVKAGQTITVFADYDVDGGTSAAQLIRWARHFG
ATFGLYVPDRVEEGYGPTAEAFRSLKSDGNDLVITVDCGAAAHSALMEAANIDLPVVVID
HHMMHGDHPPALALVNPNRDDDTSGLGHLAAAGVTFMLLVALNREARVQGLGEGPNLLNL
LDLAALGTICDVVPLTGLNRAIVAQGLHVLSKSTHLGINALADVAGAEPPYTTYHGGFIL
GPRINAGGRIGRADMGAEMLSTENAQLAYASASELDRVNTERKALQAAMLDEALTKAQAL
PDDRALTLVSMDGWHPGVIGIVAGRLKDRFDRPAIVIGVNADGIGKGSGRSMAGANLGAA
ITQAKEAGLLTSGGGHPMAGGLTVEADKIPALYDFLDAALKDQVAEARKNLSLKVDAAVK
PSAATPELIARMKAVGPYGAGHPQPRFVLPDMTVAYAERVRGGHVRCSFSDSGGQRVSGI
CFRAEEMGLDSLLLAPNPPRVHVLGRIREDIWKGRVRIDLNVEDLAVAEPS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
gtggatgacggcctgccatattgttacggcgtgcagcgctctgcgcgcggtctagcgtgg
caatggcggtgcggggatgacgacgcggtgtccgaaatggtcgcgcgcgcatctgtcgat
gacttaaccgcaagactactggtgggtcgcggcgttagcccagaagaggcggcaaagttc
cttgccccaacattgcgggattatttacccaatccgtcgagcctcgctgatatggacaaa
gccgccaacgccattgtaagcgcggtgaaagcggggcagacaatcacagtctttgcggat
tacgatgtcgacggcggaacatcagccgcccaacttatccgttgggcccgacatttcggg
gcaacgttcgggctttatgtccctgaccgcgtggaagaaggttacggccccacggcagag
gcgtttcgtagcttaaaatcagacggtaatgacttggttatcacggtcgattgcggggct
gccgcccatagcgccctgatggaagccgccaatattgacttgccagtcgtcgtgattgac
caccatatgatgcacggtgatcatccgccagctttggcgctggttaatcccaaccgagat
gacgatacatcaggtctagggcatctcgcggcggctggtgtaacctttatgctgctcgtg
gcgttaaaccgcgaagcgcgcgtgcaaggtctgggtgaggggccgaacttgttaaatttg
ctggatttggcggcacttgggacgatttgcgatgttgtcccgctgacgggacttaaccgc
gctatcgtcgcccaagggctgcacgtgttgtccaaatccactcatcttgggattaatgcg
ctcgcggatgtggcgggagcggaaccaccctatacgacctatcacggcggctttattttg
ggtccgcgtatcaatgcaggcggacgtattgggcgcgcggatatgggcgcagaaatgcta
tcgacggaaaacgcgcagctcgcttatgccagtgcgtcagagcttgaccgcgtcaataca
gagcgcaaagccctgcaagctgcgatgctggacgaggcgctaacgaaggcgcaagctctg
ccagatgaccgcgcgctgacattagtgtcgatggacggctggcatcctggcgttattggt
attgtcgcgggccgcctaaaggaccgctttgaccgtcctgccattgtgattggggtgaac
gcagacggcatcggcaagggatcgggtcggtcaatggctggggccaaccttggcgctgcg
attacgcaagcaaaagaggcgggtttgttaacatcgggcggggggcatcccatggcgggc
ggcttgactgtcgaggccgataaaattcccgcgctctatgatttccttgatgctgcgttg
aaagaccaagtggccgaggcacgcaaaaacctgtcgcttaaagtcgatgctgccgtcaag
ccctctgccgccacgccagagcttatcgcgcggatgaaagcggttgggccatacggtgcg
gggcatccgcaaccgcgattcgtcttgcctgatatgactgtggcctatgccgagcgcgtg
cgcggcggccatgtgcggtgtagtttttctgattctggtgggcagcgtgtatcgggtatc
tgtttccgcgctgaggaaatggggttagactcgctactgctggcgcccaatccgccgcgc
gtgcatgttttagggcggattcgcgaagatatttggaaaggtcgcgtgcgaattgacctg
aatgtcgaagatttagccgtcgccgagccatcatag
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