Fretibacter rubidus: AB6B37_07220
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Entry
AB6B37_07220 CDS
T10733
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
frb Fretibacter rubidus
Pathway
frb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB6B37_07220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frb03019
]
AB6B37_07220
03009 Ribosome biogenesis [BR:
frb03009
]
AB6B37_07220
Enzymes [BR:
frb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB6B37_07220
Messenger RNA biogenesis [BR:
frb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB6B37_07220
Ribosome biogenesis [BR:
frb03009
]
Prokaryotic type
rRNA processing factors
AB6B37_07220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
HC2
S1
Extensin_1
Motif
Other DBs
NCBI-ProteinID:
XER21745
LinkDB
All DBs
Position
1524543..1527518
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AA seq
991 aa
AA seq
DB search
MSKKMLIDASHPEETRVVIVNGTRVEELDFESRNKRQLRGNVYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPYEDRMALIEAEEADNAEADEEDEAKEKAVSAKTKTKSD
DDDIDDDDIDLDALEAAEDDEDDAEDDVDPNEDLEEDATDEDDAEVASEQVKTAQVRRKR
IQRRRYKIQEVIKRGQILLIQAVKEERGNKGAAMTTYLSLAGRYCVLMPNTPRGGGISRK
IANSSDRKHLKAIVNDLNVPPGIGVIVRTAGSKKTKADIKRDYDYLTRLWETIRETTLKS
TAPALIHEEGNLVKRAIRDMYNGEIDEILVQGDDAYRNAKDFIKMLMPSHAKNVKHYKDS
VPLYLRYEVEKQIENSLQSVVQLKSGGYLVIHPTEALVSVDVNSGRSTKERNVERTALKT
NLEAAEEVARQMRLRDLAGLIVIDFIDMDENRNNRAVEKKMKTALSEDRARVQYSRISQF
GLMEISRQRRRRSLLEGSTASCEHCDGVGRKRTIESSALAAIRAVEEIGARGQAKRIKLK
VSPDVALYVFNEKRDLLTKVDEEFNLFTELSGDENLIRPSFAIEIVEKTSGSDDPLEAIE
RENKKLNHEIRNKKPTGHKQTSNQDDDQNDENDGDKPAKADTDNRSDNTSDESRGKRRRR
GRRGGRNKRREDTDTSESTGEDNAAETKGEKTESRDADSKPKRSRGRRRKAQDKDENTPE
GADAKAGDNTSDKPKGRRRAAPKRNSQAEQASWPSVEPTMDAKTETTEKSVAKVPSRKGV
RAAPGRKPMADAANEAAAETKPQRTRKAPTKKAPTKKAPAETATAKKAATKPAAKKAPSR
KAPAKAANADKAPVKKAPAKKAAPKKAATKTVASKKAPAKTTAAKKASTKKAPAKKAAVK
KAPAKKAAATKEAPTKKAPAKKSPVKETTAAKPASKPAPIKAQTPTSTTPPSPSDGKKKA
PARRAAPSKPGSDDDDKGGKKKGGWLSRILK
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaatgcttatcgacgcctcccacccggaagaaacccgggtcgtcattgtc
aacgggacgcgggttgaagaactcgattttgaaagccgcaacaagcgtcagctgcgcggc
aatgtctatctcgcgcgtgtcacacgcgtagagccctcactacaggctgcttttgttgag
tacggcggaaaccgtcacggttttctcgcctttagcgaaattcatcccgattattatcaa
atcccctatgaggaccgcatggcccttattgaggcggaagaggccgataatgccgaagcc
gacgaagaagatgaagccaaggaaaaggcagtctctgctaaaacaaaaacaaaatcagac
gatgacgatattgacgatgatgatatcgatcttgacgcattagaagcggccgaagacgac
gaggatgacgccgaggacgatgtcgacccgaatgaagaccttgaagaagacgccacggat
gaagacgacgcagaagtcgcttcagagcaagttaagacggcgcaagtccgtcgcaagcgt
attcaacgtcgccgttataaaatccaagaagtcattaagcgcggccaaatcctgctaatc
caggccgtcaaagaagagcgcggcaataaaggtgcggccatgacaacttatttgtcgctg
gcaggacgttattgcgtgcttatgcctaacacaccgcggggtggcggcatatcgcgcaaa
atcgcaaatagctctgatcgcaagcatctcaaagccattgtcaatgatttgaacgtgccg
cccggtattggcgttattgtccgcacagcggggtctaaaaagaccaaagctgatatcaaa
cgcgattatgattatctaacgcggctatgggaaactattcgcgagacaaccctgaaatcc
acggcccctgcccttattcatgaagaaggcaatctggtcaaacgcgccattcgcgatatg
tataatggcgagattgacgaaattttggtgcaaggcgatgatgcttatcgcaatgccaaa
gacttcatcaaaatgctcatgccgagccatgcgaagaatgtgaaacattacaaagactcc
gtcccactctatttgcgctacgaagttgaaaaacagattgagaacagcctgcaatccgtt
gtgcagcttaaatctggcggttacctcgttattcacccgactgaagcccttgtttctgta
gacgtaaactctggccgttcgacaaaagaacgcaatgtcgagcgcacggcgcttaagact
aacctcgaagccgccgaagaagtcgctcgtcaaatgcgcttacgtgaccttgcgggcctt
attgtgattgatttcattgatatggacgaaaatcgcaacaatcgtgccgttgaaaagaag
atgaaaacagccctctcagaggaccgcgcccgtgttcaatatagccgtatttcacaattc
ggcttgatggaaatatcacggcaacgccgccgccgtagccttctcgaaggctcgaccgcc
tcgtgcgagcattgcgatggtgttggccgtaagcggacaattgaaagcagcgccctcgcc
gccattcgcgccgttgaagagattggagcgcgcggccaagccaagcgtatcaagctcaaa
gtctcccctgacgtcgcgctttatgtctttaacgaaaaacgtgatttgctgaccaaagtc
gatgaagagtttaacctcttcacggaattatcgggtgacgagaaccttatccgtccatcc
tttgcgattgaaatcgttgagaaaacgtctggttcagacgatccattggaagccattgaa
cgcgaaaacaaaaagcttaatcacgaaattcggaacaagaaacccacaggtcacaagcaa
acgtccaatcaagatgatgaccaaaatgacgagaacgacggtgataagcccgccaaagct
gacacagacaatcggtctgataatacgtccgatgaaagccggggtaaacgtcgccgtcgc
ggacgccgcggtggtcgcaataaacgtcgtgaggatacggacacgtccgagtcaactggc
gaggacaatgccgccgaaactaaaggtgaaaaaactgagtctcgcgatgctgacagcaaa
cccaagcgtagtcgcgggcgtcgtcggaaagcgcaagacaaagacgagaatacgccagag
ggtgctgatgcaaaagcgggtgataacacaagtgacaaaccaaaagggcgtcgccgtgct
gcaccaaagcgtaactcacaagctgaacaggcgtcttggccttcagtagagccaacgatg
gacgctaaaactgagacgacagaaaaatcggtcgccaaagttccgtctcgcaagggcgta
agagcggccccaggtcgaaagcctatggctgatgcggccaatgaggccgctgctgagacg
aaacctcagcgcacacggaaggctccgacaaagaaggctccaacgaagaaagcgcctgcg
gagaccgccaccgctaaaaaggcagcgacaaagccagccgcgaaaaaggcccctagtcgc
aaagcgcctgcgaaagcagctaatgcagataaagcgcccgtgaagaaggcccctgcgaag
aaagccgcaccgaaaaaagcggctaccaaaacagtggcgagcaaaaaagcgcccgcaaag
acaactgctgcgaaaaaagcttccactaaaaaggcgcctgctaaaaaggctgctgtcaag
aaggctcctgccaaaaaggctgctgcgacgaaagaagccccaacgaagaaagcccctgca
aagaaaagccctgtgaaagaaaccacagcggccaagcctgcgtcaaaaccagcaccgatt
aaggcacagacgccaacatcgactacgccaccaagcccgtcggatggtaagaaaaaggct
cctgcacgccgcgctgcaccctcaaaacccggatctgatgacgatgataagggtggtaag
aaaaaaggggggtggctctcacgtattctaaaatag
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