Fretibacter rubidus: AB6B37_14555
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Entry
AB6B37_14555 CDS
T10733
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
frb Fretibacter rubidus
Pathway
frb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB6B37_14555 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
frb03021
]
AB6B37_14555 (rho)
03019 Messenger RNA biogenesis [BR:
frb03019
]
AB6B37_14555 (rho)
Transcription machinery [BR:
frb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AB6B37_14555 (rho)
Messenger RNA biogenesis [BR:
frb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AB6B37_14555 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA
NACHT
Spore_III_AA
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
XER20134
LinkDB
All DBs
Position
complement(3147807..3149111)
Genome browser
AA seq
434 aa
AA seq
DB search
MPAQDVTIADLETLKSISLEDLKVKKPAELIAFAEAVGIENAGSMRKQEIFFSVLKDLAE
DDIQINGSGVLEVLQDGFGFLRAPEANYLPGPDDIYVTPKQIRKYGLRTGDTVSGEIRSP
RDAERYFALTTVDSLNFETPERARNKAHFDNLTPLYPDERMKMEIDDPTRKDRSGRIIDI
VSPLGKGQRALIVAPPRTGKTVLLQNIAHSIEANHPECYVIVLLIDERPEEVTDMQRSVK
GEVVSSTFDEPATRHVQVAEMVIQKAKRLTEHGKDVVILLDSITRLGRAYNTVVPSSGKV
LTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIV
LDRKVADKRVFPAIDVTKSGTRKEELLINPVDLQKTYVLRRILNPMGTMDAIEFLISKLK
DTKNNADFFDSMNT
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcacaagacgtgaccattgctgaccttgaaacgcttaaatctataagccttgaa
gacttaaaggttaaaaaacccgctgaattgattgcttttgccgaagctgttgggattgaa
aatgcagggtctatgcgtaagcaagagattttcttctctgtcctaaaagacctcgctgag
gatgatattcaaattaacggatctggcgtgctagaggttttacaagacggatttgggttc
ttgcgcgcgccagaggcgaactatctacctggtcctgatgatatctatgttacgccaaaa
caaattcgcaaatacggcctgcggacaggcgatactgtgtcgggtgaaattcgtagcccc
cgtgacgcggagcgttattttgcgctcactacagttgattcccttaattttgaaacgcca
gagcgcgcccgtaataaagcgcattttgataatttaaccccactttatcctgatgaacgg
atgaaaatggaaattgatgacccaacacgcaaagaccgttcaggccggatcattgatatt
gtctccccgctcggtaaaggtcagcgggctttgatcgttgcgccgccgcgtacaggtaaa
actgtcttgctgcaaaacattgcgcactctatcgaggccaatcaccctgagtgttacgtt
attgtcttgctcattgatgaacgccccgaagaggtgaccgacatgcagcgcagcgttaaa
ggggaggtcgtcagttctacttttgatgaacctgcgacccgtcacgtacaagtggcggaa
atggtcattcaaaaagcaaagcgtctgactgaacacggtaaagatgttgtcattttgctc
gatagtatcacgcgtcttggccgagcttataacactgtcgttccaagctctggtaaggtt
ttaacaggtggtgtggatgcgaatgcgctgcaacgtccaaagcgtttctttggtgccgcc
cggaatatcgaagaaggtggatcacttacaattattgcgacagccttgattgatacggga
tctcgtatggacgaagttattttcgaagagttcaaaggtacgggcaatagtgagattgta
cttgaccgtaaggttgccgataaacgcgttttccccgcgattgatgtcaccaaatcaggg
acacgaaaagaagagcttttgattaatcctgttgatttgcaaaagacctatgtcctgcgc
cgtatcttaaacccgatgggcacaatggacgcgattgaatttctgatatcgaaattaaaa
gatactaaaaacaatgcagatttctttgatagtatgaatacctaa
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