Francisella frigiditurris: KX01_1482
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Entry
KX01_1482 CDS
T05636
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
frc
Francisella frigiditurris
Pathway
frc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
frc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KX01_1482 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
frc03400
]
KX01_1482 (mfd)
Enzymes [BR:
frc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KX01_1482 (mfd)
DNA repair and recombination proteins [BR:
frc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KX01_1482 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
AAA_30
UB2H
Motif
Other DBs
NCBI-ProteinID:
APC97135
UniProt:
A0A1J0KTX8
LinkDB
All DBs
Position
1466009..1469434
Genome browser
AA seq
1141 aa
AA seq
DB search
MIPNTINSKDTIISNAYGPSFSIFIKEFIKSNNNFHFIITEDSQQASKIYEELKYLTKNS
KFEILYFPSLEILAYDRFSASNDILSTRQKILYKLENNPKNTILVSNISTILKKLAPKTF
LEQNSFILKVNDTFNITKQKSKLIDLGYSFVNNVFEKGEFSIRGNIIDIYPIGSKVPYRI
DLFDDEVDSIKELDIETQRSSNSIDEICLIPTHEIIYNNDSINLALNKLEEVFGSTVRDS
SIVKYIKNKEFFSGIEFYTPLFYRKLESIFDYLPQNLNIHLFGDIYSSINAFTEEVKNRY
KQLSIDIDRPILEYRELFLTLENIQENLKNYKIIKWLENDISKSKVLPINNLPNINANYK
LNKPFNNLQNFLNNKSFEKIVFSTDTLGRGEILQEHLKKIGLKLSNFKSLDDALNSDSKY
SLIYSPFQEGIIIADKIVIITESELFPEHTKTIARSKDFDDLPTVDLKDLTDLKKGMHIV
HINYGIGKYEGLETLEINNKKDEFILLKYADNAKIYVPVTSLNLISIYNSSITDNIALNK
LGTDKWSKQKDKAIKRIIDVAANLLEIYAKRELKQGFSNHLDEQEYLRFCADFPYEETLD
QQKAISDVFKDMIASKPMDRLICGDVGFGKTEVAMRAAFLATHNQKQVAILVPTTILAQQ
HYNNFRDRFANTAVNIEVITRSKTAKKQEELFEDLEKGNVDIIIGTHKLISSKIKFKNLG
LLIIDEEHRFGVDQKEKLKALKAEIDILTMSATPIPRSLSMAFSSLRDLSIIASPPAKRL
SVKTFVKEYDNNIVREAVLRETMRGGQIFYLHNHVETIQKKKEILEEMFPKCRITVAHGQ
MSEREIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIENANKFGLAQLHQLRGRVG
RSHHQAYAYLLISDEASITKDAKKRLDAIDSTDSLGGGFMLANHDLEIRGAGEILGKEQS
GNIDGIGLNLYMELLDKTIANIKAGKELNVEELINANTCEVELNIPTLITDDYVNDVNTR
LNIYKRISKADHKQLIDIKIELIDRFGLLPLEVQYLLKVAHIRLDAIKLGIKQIKMFNTS
GKIAFSTPLKFDPSLLIKAIQSKPMDFKLSKDQDLLITKITKTAEERLSFIENFLKLLSK
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgattcctaataccataaattctaaagacactataatttctaatgcttatggtccttct
tttagtattttcataaaggaatttataaaaagtaataataattttcattttataattaca
gaagactctcaacaagcatcaaaaatctatgaagagctaaaatatctaacaaaaaactct
aaatttgaaatattatattttcctagtttagaaatacttgcttatgatagattttcggct
tccaatgatatcttatctactagacaaaaaatattatacaaattagaaaataatcctaaa
aatactattttagtctctaatatttctacaattttaaagaaattagccccaaagacattt
ttagaacaaaatagctttatcttaaaagttaacgatacctttaatatcactaaacaaaaa
tctaaacttattgatctaggatatagttttgttaataacgtatttgaaaaaggtgaattt
agtattcgtggaaatattatagatatatatcctattggatcaaaagtaccttatagaatt
gacctatttgatgacgaagttgatagcataaaagagttagatatagaaactcaaagatct
tcaaatagtatagatgaaatttgcttaatcccgactcatgagattatttacaataatgat
tcaatcaatcttgctctaaataaattagaagaggtttttggaagtacagtaagagacagt
agtatagtaaaatatatcaaaaacaaagagttttttagtggtattgaattctatactcca
ttattttatagaaaattagaaagtatattcgactatttacctcaaaatttaaatatccat
ttatttggtgatatttatagctctattaatgcttttactgaagaagttaaaaatagatac
aaacaacttagtatagatattgatagaccgattttagaatatagagaacttttcttaact
ctagagaatatacaagaaaaccttaaaaattataaaataataaaatggttagaaaatgat
attagtaaatcaaaagttttgcctatcaataatttaccaaatataaatgcaaactataaa
ctaaataaaccatttaataacttacaaaattttttaaataataaatcctttgaaaagata
gtattttcaacagataccttaggaagaggagagattcttcaagagcatctcaaaaaaata
gggttaaaactatctaattttaaaagtttagatgatgcactaaattcagacagtaaatac
tctcttatatattcgccttttcaagaaggtattatcatagctgataaaatagtaatcatt
acagagtcagagctttttccagaacatactaagactatagctagatctaaagattttgat
gacttacctactgttgatttaaaagacttaacagatttaaaaaaaggtatgcatatagtc
catattaactatggaattggaaaatatgaaggtttagaaaccctagagattaataacaag
aaagatgagtttatattactaaaatatgctgataatgcaaaaatctatgttcctgtaaca
tctttaaatttaataagtatatataactcatctattacagataatattgctttaaataaa
ttaggcactgataaatggagcaagcaaaaagataaggctataaaaagaattattgatgtt
gctgctaatttattagaaatttacgcaaaaagagaattaaaacaaggtttctcgaatcat
cttgatgaacaagagtatcttagattttgtgctgattttccatatgaagaaactttagat
caacaaaaagctatctctgatgtttttaaagatatgatagcaagtaagccaatggacaga
ttaatctgtggagatgttggttttggtaaaacagaagtagcaatgagagccgctttctta
gcaactcataatcagaagcaagtagctatacttgtacctactacaatattagcccaacag
cattataataattttagagatcgatttgctaataccgctgtaaatatagaagttattact
cgctcaaaaacagcaaaaaaacaagaagagttatttgaagatttagagaagggtaatgtc
gatattattattggaacacataaacttatctcctctaaaattaaattcaagaatttaggt
ttactaataatagatgaagaacatcgttttggagttgatcaaaaagagaaactaaaagct
ttaaaagccgaaatagatattttaacaatgtcagccacacctatcccaagaagtttgagc
atggctttttcatcacttagagatctttctataatagcctctcctcctgctaaaagatta
tctgtaaaaacttttgttaaagaatatgataataatatagttagagaagctgtccttaga
gagactatgcgtggtggacaaatattttatcttcataatcatgttgaaactattcaaaag
aaaaaagaaatcctagaagaaatgtttccaaagtgtaggattacagttgctcatggacaa
atgagtgaaagagaaattcaaaaagttatgtttgattttaagcataacaaatatcatata
ttgctttgtacaactattattgaaactggtatagatattccaaatgctaatactcttatt
atagaaaatgctaataaatttggccttgctcaattacatcagctaagaggccgcgtcgga
agatcacatcaccaagcatatgcctatttactaatttctgatgaagctagcattacaaaa
gatgccaagaaaaggttagatgcaatagactctacagactctcttggaggtggctttatg
cttgctaatcatgatttagaaattcgtggagctggtgagatattaggtaaagagcaaagt
ggaaacattgatggcattggtctaaacctatatatggagctattagataaaactattgcc
aatataaaagctggtaaagaattaaatgttgaagagcttataaatgctaatacttgtgaa
gttgagttaaatatccctactcttataacagatgattatgttaatgatgtaaatactaga
ttaaatatttacaaaagaatatctaaggcagatcataaacaattaatagatataaaaatt
gaacttattgatcgttttggactacttcctttagaagtgcaatatttactaaaagttgct
catattagattagatgctataaaactaggaatcaaacaaattaaaatgttcaacactagt
ggcaaaatagcattttcaacaccattaaaatttgacccttctttactaataaaagctatt
caaagtaaacctatggattttaaattatcaaaagatcaggatttacttataaccaaaatt
acgaaaacagctgaagaaagattaagctttatagaaaattttctaaaacttttatcaaaa
aattaa
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