Parafrankia sp. EAN1pec: Franean1_1140
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Entry
Franean1_1140 CDS
T00608
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
fre
Parafrankia sp. EAN1pec
Pathway
fre03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Franean1_1140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fre03400
]
Franean1_1140
Enzymes [BR:
fre01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Franean1_1140
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Franean1_1140
DNA repair and recombination proteins [BR:
fre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Franean1_1140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABW10594
UniProt:
A8L594
LinkDB
All DBs
Position
1360011..1360886
Genome browser
AA seq
291 aa
AA seq
DB search
MPELPEVEVVRRGLERGVVGRTVAEVEVHHLRAVRRHLAGADHFAASLVGQTVATARRRG
KYLWLGLTPSEPGGPAVGDALLGHLGMSGQLLVVPADSPDQVHLRVRFRFTDEGRELRFV
DQRTFGGLAVVSGGAELPAPIAHIAPDPLSVDFDPERFADALRRRRTGLKRALLDQTLIS
GVGNIYADEGLWAARLHYARPTETVTRAEALRLLDAVRTVMTAALAAGGTSFDRLYVSTE
GVSGLFERSLEVYGRGGQACSRCASTIRRDAFMNRSSFSCPACQPRPRRVR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgcccgaggtcgaggtcgtccgccggggcctcgagcgcggggtggtcggc
cgcactgtcgccgaggtggaggtccatcacctgcgggcggtccgccgccatctcgccggg
gccgaccacttcgccgcctcgcttgtcgggcagacggtggccacggcgcgccggcgcggc
aagtacctgtggctcgggctcacgccgtctgaaccgggcggcccggcggtcggtgacgcg
ctgctcggtcatctcgggatgagcggccagctcctcgtggttccggcggacagcccggac
caggtacacctgcgggtccgtttccggttcaccgacgagggccgcgagctgcgcttcgtg
gaccagcggacgttcggtggtcttgctgtggtctcgggcggggcggagctgcctgccccg
atcgcccacatcgcgcccgacccgctctccgtcgacttcgacccggagcgtttcgccgac
gcgctgcgccgccggcgcaccggcctcaagcgcgccctgctcgaccagacgctgatcagc
ggcgtgggcaacatctacgcggacgagggcttgtgggccgcgcgcctgcattacgcccgc
ccgaccgagacggtgacccgcgccgaggcgctgcggctgcttgacgcggtccgcacggtg
atgacggcggcgctggccgccggcggtacctccttcgaccggctctacgtctcgaccgag
ggcgtcagcgggctgttcgaacgctcgctggaggtctacggacgcggcggccaggcgtgc
tcccgctgcgcctcgaccatccgccgggacgcgttcatgaaccgctcgagcttcagctgc
ccggcgtgccagccccggccccgccgggtccggtga
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