Parafrankia sp. EAN1pec: Franean1_4913
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Entry
Franean1_4913 CDS
T00608
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fre
Parafrankia sp. EAN1pec
Pathway
fre03030
DNA replication
fre03430
Mismatch repair
fre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Franean1_4913
03430 Mismatch repair
Franean1_4913
03440 Homologous recombination
Franean1_4913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fre03032
]
Franean1_4913
03400 DNA repair and recombination proteins [BR:
fre03400
]
Franean1_4913
Enzymes [BR:
fre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Franean1_4913
DNA replication proteins [BR:
fre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Franean1_4913
DNA repair and recombination proteins [BR:
fre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Franean1_4913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
BRCT
Motif
Other DBs
NCBI-ProteinID:
ABW14278
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All DBs
Position
complement(5899607..5900776)
Genome browser
AA seq
389 aa
AA seq
DB search
MAVDERLKTTDTQYHPRSRPDSLFPSRCPPSAPGSLRPRTAPGSAAPDRRGSAPSSAAVS
AEVLAPPGFAARFRRPYAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPGC
DPGPVHIHGLTRQRLAGSPTFAAVADEVAGLLAGRVLVAHNAAFDWRMLAGEAMRIGTTI
PVEWRLCTLTLASRLGLELPSLRLASLAAYWGVVQRRAHDAQDDAEVLAALLPRILQRAA
DQYLELPLTRCGVDHDGVTVRPPRFAAAGRTPPCRYRNPGRLDPGAALVQGMRVAFSGPT
RTERGELVGRAVAAGLHVTETVSRRTSLLVTNDARGVTRKVRTAALLNTPVRGEEDFLEL
LAAVRPGILVPAAAPVRRDRRPRRPTPDA
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
gtggccgtcgacgagcgacttaaaacaacggacacacaataccatccgcgatcacggccg
gattcgttgtttccctcgcgttgccctccatccgcaccaggttcgctccgtccccgcact
gctccgggcagcgcggcgccggaccgtcgggggtctgcgccatcatctgcggctgtgagt
gctgaggttcttgccccgcccggcttcgccgcacgttttcgtcggccgtacgcggtggtg
gacgtcgagaccacgggcctgtccccgacgagggacagggtgctgtcggtagcggtcgtc
ctgaccgccgccgacggcaccgtcgaacaccgctggtcaaccctcctggatcccggatgt
gatcccggccccgtccatattcacggtctgaccaggcagcgcctggccgggagcccgacg
ttcgccgccgtcgccgacgaggtcgccggcctgctcgccgggcgggtgctcgtcgcgcac
aacgcggccttcgactggcggatgctagccggcgaggccatgcggatcgggacgacgatc
ccggtcgagtggcggctgtgcacgctgacgttggccagtcggctcggcctggagctgccg
agcctgcgcctggcctcgctcgccgcgtactggggcgtcgtccagcggcgggcccatgac
gcgcaggatgacgccgaggtgctggcggccttgttgccccgcatcctgcaacgtgccgcc
gaccagtacctggagctgccgctcacgcgctgcggcgtcgaccacgacggcgtcacggtg
cgcccgccgcgcttcgccgccgcgggccgcacgccgccgtgccgttatcgaaaccccggg
cggctcgatcccggtgcggcgctggtccagggaatgcgcgtcgctttcagcggccccacg
cggacggaacgcggcgagctcgtcggccgggcggtcgccgcaggcctgcatgtgacggaa
accgtgagtcggcgcacaagtcttctggtgaccaatgacgctcgcggcgtgacccggaag
gtccgcaccgccgcgttgttgaacacacccgtacgaggagaggaagatttcctggaattg
ctcgcggccgttcgcccaggaattctcgtcccggctgccgcacccgttcgccgtgaccgc
cggccgcggcgcccgaccccggacgcgtga
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