Parafrankia sp. EAN1pec: Franean1_5178
Help
Entry
Franean1_5178 CDS
T00608
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
fre
Parafrankia sp. EAN1pec
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fre03016
]
Franean1_5178
Enzymes [BR:
fre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Franean1_5178
Transfer RNA biogenesis [BR:
fre03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Franean1_5178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABW14536
LinkDB
All DBs
Position
6213861..6215360
Genome browser
AA seq
499 aa
AA seq
DB search
MRLLGRLGCQAGHSHVPSPIVTSTVPDSTHQVSEGAAIDAAAAVEESATVPIPLLEPAGG
VPPVLDDPQDLTRATERLAAGTGPVAFDAERASGYRYSQRAYLVQIRRAGAGTLLIDPIA
LPDLSGVQDAVGDTEWVLHAASQDLPCLAELGLRPKTLFDTELAGRLLGYERVGLGAMVE
RVLGFGLEKGHSAADWSNRPLPEPWLRYAALDVELLVELRDQLESELVAQNKMAFARQEF
DAIAAAPPREPRAEPWRRTSGIHRARSRRQLAAVRSMWQARDRVARTRDIAPGRVLPDIA
IMDAVLKAPEDAAALTRLPIFSGPRLRRSATTWMDALRAAAEMPENQLPSTAGPGGDGLP
PQNRWAERDPVAAARLARVRAALNAIAEDQGMPVENLLEPALARRVTWTPPATRDTETVT
AALTTGGARPWQVELTAAAVAAALVDPPAGTAAAPGATGGETAGGGAGGTGSAAGGGSAR
ARTRRTGGRPLSGGEPAAS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
gtgcgattgctcggccgactgggctgccaggccggtcattcacacgtaccatcgccgatc
gtgacgtcgacggttcctgactcaacgcaccaggtcagtgagggtgcggcgatcgatgct
gccgccgctgtcgaagagtcggcaactgtacccatcccgctgctggagccggccggtggc
gtcccgcccgtcctcgacgacccgcaggacctcacccgcgccaccgagcggctggccgcc
ggcaccggcccggtcgccttcgacgccgagcgcgcctccggttaccggtacagccagcgt
gcctacctcgtccagatcaggcgggccggcgcgggcaccctgctcatcgacccgatcgcc
ctgcccgacctgagcggcgtgcaggacgccgtcggcgacacggaatgggtgctgcacgcc
gccagccaggacctgccctgcctggccgagctgggcctgcgcccgaagacgctgttcgac
accgagctcgccggccgtctgctgggctacgaacgggtggggctgggcgccatggtcgag
cgggtgctcggcttcgggttggagaaggggcactccgccgccgactggtcgaaccgcccg
ctgcccgaaccgtggctgcgctacgccgctctcgacgtggagctgctggtggagctgcgc
gaccagctcgagagcgagctggtcgcgcagaacaagatggcgttcgcccggcaggagttc
gacgcgatcgccgccgctccgccgcgggagccgcgggccgagccgtggcggcgcacgagc
gggatccaccgcgcgcgcagccgccgccagctcgccgccgtccggtcgatgtggcaggcc
cgagaccgggtcgcccgcacccgcgacatcgcgccgggccgggtgctgcccgacatcgcg
atcatggacgcggtactgaaggcccccgaggacgccgccgcgctgacccggctgccgatc
ttctccgggccgcggctgcggcgctcggcgaccacctggatggatgccctgcgcgccgcc
gccgagatgcccgagaaccagctgccgagcaccgcgggcccgggcggcgacggcctcccc
ccgcagaaccgctgggcggaacgtgaccccgtggcggcggcgcggctggcccgcgtgcgc
gcggcgctgaacgcgatcgccgaggatcagggcatgccggtggagaacctgctggagccg
gcactcgcccgccgggtcacctggactcccccggccacacgggacaccgagacggtgacc
gccgcgctgaccacgggcggcgcccgcccctggcaggtcgagctgacggcggccgcggtg
gccgcggccctggtggacccgcccgcgggcaccgccgccgcgcccggagccaccggcggc
gagaccgccggcggcggagcgggcggcaccggttccgcggcgggcggcgggtccgcgcgg
gcgagaacgcggcggaccggcggccgtccgctgtccggtggggaacccgccgcgtcctga
DBGET
integrated database retrieval system
