Parafrankia sp. EAN1pec: Franean1_5262
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Entry
Franean1_5262 CDS
T00608
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fre
Parafrankia sp. EAN1pec
Pathway
fre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Franean1_5262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fre03019
]
Franean1_5262
03009 Ribosome biogenesis [BR:
fre03009
]
Franean1_5262
Enzymes [BR:
fre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Franean1_5262
Messenger RNA biogenesis [BR:
fre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Franean1_5262
Ribosome biogenesis [BR:
fre03009
]
Prokaryotic type
rRNA processing factors
Franean1_5262
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ABW14620
LinkDB
All DBs
Position
complement(6325145..6329428)
Genome browser
AA seq
1427 aa
AA seq
DB search
MPEDQIIEDQATRSEVTPSETVPSDNTLADTAAPATAAPEPVTPATAVAESAAPESVTAE
TAPQRPTRRRRAAGRPAGPPPEEAGPPAAAADGETAVDAADSATGAGAGAVSSTLPVSDG
AAPDAAVPLVEAGAEPAPEAAPAKPARRARTTRPRRASREVSEAVPDTTATPAPSDTTSP
AAGSSDTTSLDTRAPETTSSATAAPEAGADNVPGSPGQVAKGDVTASDALADTTASGEAA
PAVTKPRRTRARRAATKVEPAAETGTPTGAPGSESAASASSSVGEPAVGQTPAASAPAPA
AAPDSVADAATPPAVAATSQVVAATSPAPEPAIDETVDPLAEPVDELPADATADADAGTS
AAGTGAAATDAPGAQPAVASSPEPVIAATVADTAAVTGAGTTGTTEATPAAGPEAVAGTE
TAPGPEAVGAPEPPRAERTSRRRTRAVAPTWTSGAEAPAPAPVTRQSARRPVAMITFQQP
EPAVVDPWPRRRRDADDAPAEPAVTGRGGLTGAGLDDVAPADEIVDAADDAVAYDTAEFG
EALETESSEQAFDGGEYSSTDADGDDAGPGGTRRRRRGRRGRGRARGEDEISETSDLAEE
QVDEAEERDDRELEAEPVEREPRSSRRRSRRSPTRETFDEAEEIDSEAELVAGADSGADT
DTDTESDADDGADLEDGADDSAEDGSDDDRAGGSRRRRRRRRRSGTGAETTPVPDDPPNT
VVHVRETRRDDDLVRGVSGSTRLEAKRQRRREGRDSGRRRAPIVTEAEFLARRESVERRM
IVRHNGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIGKGRN
AVLYAGEVNYDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLV
YVPDGQNAGISRKLPDTERARLKSILKKITPENGGVIVRTAAEGASEAELERDIERLVAQ
WEDIQRKAQKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAATVEGYVDTVAPD
LRDRVRRYVGTGDVFAEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTG
KGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRD
RTRHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCNGRGVLVHLDSAHSRDAQSRDGA
QPREAASSASQPAAEAPAQAAGTSTGRRARHATKPAGPALVAAAVSSAVDGAHVSSDDAS
GSVNGSASAESTDSSGSVGSAGVSGPAEAVALGEHPAAQAGASLLDAVAPRAARIAVTVG
AGSDQGTESNGVDSNGVSGGPGANGTGSGGAEGTTVDGESRPGSGGIPVFANTDDPDSVL
HSGTNGAGTPAGAEKPARARRRRASRPVSKPTDTAQPIPVPSEATST
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaagatcagatcatcgaggaccaggccacgcgctccgaggtaacgccctccgag
accgtgccctccgacaacacccttgccgataccgcggcccctgcgacggcggctcccgag
ccggtgactcccgcgacagctgtcgctgagtctgcggcccctgagagcgtgaccgccgag
accgctccgcaacgccccacccggcgccgccgcgcggccggcagaccggccgggccgcca
cctgaggaggcaggcccgcctgccgccgcggccgatggcgagaccgccgtggacgcggcc
gattccgccactggcgccggtgccggtgccgtgtccagcactctccccgtgtccgacggt
gcggcgcctgacgccgcggtaccgctggtcgaggccggcgccgagccggcgcccgaagcc
gcgccggccaagccagcccggcgggcgaggacgacccggccgcgccgggcctcccgggag
gtcagcgaggccgtacccgacaccacagccacccccgctccctccgacaccacgtcgccc
gccgccggctcgtccgacacgacgtcgctcgacaccagggcacctgagaccacgtcgtcc
gccaccgcggcgcccgaggccggagcggacaacgtccccggctcgcccgggcaggtcgcg
aagggcgacgtcaccgcgtccgatgcgctcgctgacactacggcgtcgggcgaggctgcc
cccgccgtgaccaagccgcgtcgcacccgtgctcgtcgggcggccacgaaggtcgagccg
gcggccgagaccggcactcccacgggtgcgccgggcagcgaatccgccgcctcggcgtcg
tccagcgtgggcgagccggcggtcgggcagactcccgccgcctccgctccggcccccgcc
gcagccccggactcggtggccgacgcggccaccccgccggctgtcgcggccacctcgcag
gtggtagcggccacctcgccggctcccgagccggccatcgacgagaccgtcgacccgctc
gcggagccggtcgacgaactgccggcggacgccaccgccgacgcggacgccgggaccagc
gctgccgggactggcgccgccgcgacggacgcgcccggggctcagccggcggtcgcgtcc
tcgccggagcccgtgattgccgcgacggtggcggacacagcggctgtgacgggcgccgga
accaccggaaccaccgaagccacccccgcggccggtcccgaggcggtcgccggaacggag
accgcccccggtcccgaggcggtcggtgcgcccgagcccccgcgggcggagcgcacctcg
cggcggcgcacgcgggcggtcgccccgacgtggaccagcggcgccgaggcccccgccccc
gcgccggtgacccggcagtcggcccgtcgcccggtggcgatgatcaccttccagcagccg
gagccggcggtcgtggacccgtggccccgccgccgtcgtgacgctgacgacgcgccggcc
gagcccgccgtgaccggtcgcggcggcctcaccggtgcgggcctcgacgacgtggccccg
gccgacgagatcgtcgacgcggccgacgacgcggtggcgtacgacaccgcggagttcggt
gaggcactggagacggagagcagcgagcaggcgttcgacggcggcgagtactcgtccacc
gacgcggacggcgacgacgccggaccgggcggaacccgccgccgccgccgcggccgccgt
ggtcgtggccgggcccgcggcgaagacgagatctccgagaccagtgaccttgccgaggag
caggtcgacgaggccgaggagcgcgacgaccgcgagctcgaagccgagccggtggagcgt
gagcccaggtcctcccgccgccgctcacgtcgctcgccgacgagggagacattcgacgag
gcggaggagattgactccgaagccgagctggtggccggagccgactccggagccgacacc
gacaccgacaccgagtctgacgccgacgacggcgcggacctcgaggacggcgcggacgac
tcggccgaggacggttcggacgatgaccgcgccggtggatctcgccgccgccgccggcgc
cgccgccgttccgggaccggcgcggagaccacgccggtccccgacgaccccccgaacacc
gtcgtgcacgtgcgcgagacgcgccgggacgacgacctcgtccgcggggtcagcggttcc
acccggctggaggcgaagcgccagcgccggcgcgagggccgcgacagcggtcgccgccgc
gcacccatcgtcaccgaggccgagttcctcgcccggcgggagtcggtcgagcgccggatg
atcgtccggcacaacggtgaccgcacccagatcgccgtgcttgaggacggcgtcctggtc
gagcacttcgtgacgcgcgccagctcggcgtcctacgcgggcaacgtgtacctcgggcgg
gtgcagaacgtcctggccagcatggaggcggcgttcgtcgacatcggcaagggccgcaac
gccgtcctgtacgccggtgaggtcaactacgacgcctcgggcctcgacggccggccgcgc
aagatcgagcaggtgctgaagtccgggcagtcggtgctcgtccaggtctcgaaggacccg
atcgggcacaagggcgcgcggctgaccagccaggtgagcctgcccggccgctacctcgtg
tacgtgccggacggccagaacgccggaatcagccgcaagctgccggacaccgagcgcgcc
aggctgaagagcatcctcaagaagatcactccggagaacggtggggtgatcgtccgcacc
gcggcggagggtgcgagcgaggccgagctcgagcgcgacatcgagcgcctcgtcgcgcag
tgggaggacatccagcgcaaggcgcagaaggccagcgcgccgtccctgctctacggcgag
cccgacctggtggtgcgggtcatccgcgacatcttcaacgaggacttcaccgagctggtc
gtccaggggtcgcacgaggccgcgaccgtcgagggctacgtcgacacggtcgccccggac
ctgcgcgaccgcgtccgccgctacgtcggcaccggggacgtcttcgccgagcaccgggtg
gacgagcagctcgcgaaggcgctggaccgcaaggtctggctgccctccggcggctcactg
gtcatcgaccgcaccgaggcgatgaccgtcatcgacgtcaacaccggcaagttcaccggc
aagggcggcaacctcgaggagacggtcaccaagaacaacctcgaggccgcggaggagatc
gtccgccagctccggctgcgcgacatcggtggcatcatcgtcatcgacttcatcgacatg
gtgctggagagcaaccgcgagctggtgctgcgccggctcaccgagtgcctcggccgggac
cggacccgccaccaggtcgccgaggtgacgagcctgggcctcgtccagatgacccgcaag
cgggtgggccagggcctgctggaggcctacagcgagccgtgcgcccactgcaacgggcgc
ggtgtgctcgtccacctcgactccgcgcactcaagggacgcgcagtcgcgggacggggca
cagccgagggaggcggcgtcgtcggcgagccagccggcggcggaggctccggcccaggcg
gccggtacctccacgggccgccgcgcacggcacgcgacaaagcccgctggtccagccctc
gtggctgccgcggtctcgtcggccgtggacggggcgcatgtctcctcggacgatgccagc
gggtccgtgaacggctccgcatcggctgaatcgactgattcgtctggatcagttggatcg
gctggggtgtcggggccggcggaggcggtggctcttggtgaacacccggccgctcaggcc
ggcgcgtccttgctggacgccgtcgcaccgcgggccgcccggatcgccgtaacggttgga
gccggaagcgatcagggcactgagagtaacggcgtcgacagcaacggcgtcagtggcggg
cccggggctaacgggaccgggagtggcggggccgagggcaccacggtcgacggtgagtcg
cggccgggttccggcggaatcccggtgttcgcgaacaccgacgatccggacagcgttctg
cattccggtacgaacggtgcgggcactccggctggcgccgagaagccggcccgcgcccgt
cgccgtcgcgcatcccgcccggtctccaagcccacggacaccgcccagccgatccccgtt
ccctccgaagccaccagcacctga
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