Parafrankia sp. EAN1pec: Franean1_5950
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Entry
Franean1_5950 CDS
T00608
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fre
Parafrankia sp. EAN1pec
Pathway
fre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Franean1_5950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fre03019
]
Franean1_5950
03400 DNA repair and recombination proteins [BR:
fre03400
]
Franean1_5950
Enzymes [BR:
fre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Franean1_5950
Messenger RNA biogenesis [BR:
fre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Franean1_5950
DNA repair and recombination proteins [BR:
fre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Franean1_5950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Dimerisation
PglZ_C
Pribosyltran
HTH_IclR
DUF7343
HTH_Cmi2_C
WHD_DprA
Motif
Other DBs
NCBI-ProteinID:
ABW15294
LinkDB
All DBs
Position
complement(7254946..7257195)
Genome browser
AA seq
749 aa
AA seq
DB search
MADQATVSGTLRDRAEELLRALAGPGAVLRDDQWQAIDALVSGRRRVLLVQRTGWGKSAV
YFLATALLRGLGDSDPGDSDPGDSEPGDSEPGDSGSSGPRPGGGPAAQVGPTVIVSPLLA
LIRNQAAAAARVGIRAGEIHSGNLTEWDEVYAALRAGELDLLLVGPERLNNPTFRDEYLP
ELAATTGLLVVDEAHCISDWGHDFRPDYRRLRSLIGGLRPDVPVLATTATANARVVEDVS
EQLGAGSTSAETVVLRGSLDRESLRLAVVSLPAAEQRFGWLADHLAELPGSGIIYTLTKP
GAEELTAFLRGQGHEVTTYHGGTEPAERIAAEEDLLGNRVKALVATSALGMGFDKPDLGF
VVHVGAPNSPIAYYQQIGRAGRAVESAEVVLLPATEDRDIWRYFADTSFPPEPVARQVLD
VLAQAGRTMSTQALLAAVDLGHSRLEQMLKVLDADGVVRRVKGGWEATGEPWVYDAERFR
RVAAARAREQRAMLDYIATPSCRMEFLRHALDDPYAVPCGRCDRCTGRVWSTEVSSRSRD
SAREELRRTGVPVEPRRMWPTGMRTLGVAASGRIPASVTAEPGRVVARLNDLGWGNRLRQ
LFAPPPEAQDGPVPDDLFEAVVRTLTEWRWERRPAAVVTVASRTRPCLVADLGERIAGVG
RLPLLGQLPRVAGGPAAGRVHNSAHRLAGLWSAFEVPPPIAGPLAELTGPVLLVDDLIVT
GWTMTVAARALRQAGAPGVLPFALAVETG
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcaggcgacggtcagcgggacgctgcgcgatcgggcggaggagctgctccgg
gctctggctgggccgggcgcggtcctgcgtgacgaccagtggcaggcgatcgacgcgctc
gtcagcgggcggcggcgggtgctgctcgtccagcgcacgggctgggggaagtccgcggtg
tacttcctcgccacggcgctgctacgcggtctcggcgactcggatccgggtgactcggat
ccgggtgactcggaaccaggtgactcggaaccaggtgactcgggttcaagcggtccgagg
ccgggcggcggtccggccgcccaggtggggcccacggtgatcgtctccccgctgctggcg
ctgatccgcaaccaggcggccgcggcggcacgggtgggcatccgggccggggagatccat
tcggggaacctcaccgagtgggacgaggtctacgccgcgctgcgggcgggggagctggac
ctgctgctcgtcggcccggagcggctgaacaacccgaccttccgcgatgagtacctcccg
gagctcgcggccacgacggggctgcttgtcgtcgacgaggcgcactgcatctccgactgg
ggccacgacttccgtccggactaccgccggctgcggtcactgatcggcgggctgcggccg
gatgtgcccgtgctcgcgacgaccgccacggccaacgcgcgggtggtcgaggacgtcagc
gagcagctcggggccggctccacgagcgcggagaccgtggtcctgcgggggtctctcgac
cgggagagcctccggctggcggttgtgtcgcttcccgcggccgagcagcggttcggctgg
ctggccgaccatctcgcagagctacccggctccgggatcatctacacgctcaccaagccg
ggcgcggaggagctgaccgcgttccttcgcggccagggccacgaggtgacgacctaccac
ggcggcacggagccggccgagcgcatcgccgccgaggaggacctgctcggcaaccgggtg
aaggcgctggtggcgacgagcgctctcgggatgggcttcgacaagcccgatctcgggttc
gtcgtccacgtcggtgcgccgaactcgccgatcgcctactaccagcagatcgggcgggcc
gggcgtgcggtggagtccgccgaggtcgtcctgctgcccgccaccgaggaccgtgacatc
tggcggtacttcgccgacacgtcgttccccccggagccggtcgcccggcaggtgctggac
gtcctggcccaggccgggcggacgatgtcgacgcaggcactgctcgccgccgtcgacctg
gggcactcccggctcgagcagatgttgaaggtgctcgacgcggacggcgtcgtccggcgg
gtcaagggcggctgggaggcgacgggcgagccgtgggtctacgacgccgagcgcttccgt
cgcgtcgccgccgcgcgggcccgcgagcagcgggcgatgctcgactacatcgcgacgccg
tcctgccggatggagttcctgcgccacgcgctcgacgatccgtacgcggtgccgtgcggc
cggtgtgaccggtgcaccggtcgggtgtggtccaccgaggtctcctcccggtcgagggac
agcgcccgcgaggagctgcgccggacgggcgtgcccgttgagccgcgccggatgtggccg
acgggcatgcgcacgctgggggtcgccgcgtccggccggattcccgcgtcggtcaccgcc
gagcccggccgcgtggtcgcacggctcaacgacctgggctggggcaaccggctgcgccag
ctgttcgcccctcctcccgaggcccaggacggccctgtccccgacgacctgttcgaggcg
gtggtgcggaccctgaccgaatggcggtgggagcggcgcccggcggccgtggtgactgtg
gcgtccaggacacgcccgtgcctggtggcggacctcggtgaacggatcgcgggtgtcggg
cggctgccgttgctggggcagctcccccgagtggccggcgggcccgcggccggccgggtg
cataacagcgcccaccgcctcgccggcctgtggtcggccttcgaggtgccaccgcctatc
gccggcccgctcgccgagctgaccgggccggtgctgctcgtcgacgacctgatcgtcacg
ggctggacgatgaccgtcgcggccagggcgctgcgccaggccggcgcgccgggcgtgctg
ccgttcgccctcgccgtcgagaccggctga
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