Parafrankia sp. EAN1pec: Franean1_6022
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Entry
Franean1_6022 CDS
T00608
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fre
Parafrankia sp. EAN1pec
Pathway
fre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Franean1_6022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fre03021
]
Franean1_6022
03400 DNA repair and recombination proteins [BR:
fre03400
]
Franean1_6022
Enzymes [BR:
fre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Franean1_6022
Transcription machinery [BR:
fre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Franean1_6022
DNA repair and recombination proteins [BR:
fre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Franean1_6022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
ABW15366
LinkDB
All DBs
Position
complement(7344818..7345945)
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AA seq
375 aa
AA seq
DB search
MPPCRLLFRGFHGVIWRSPCSEGSSLMLIAQRPSLAEDPISEFRSRFVIEPLEPGFGYTL
GNSLRRTLLSSIPGAAVTSIRVDGVLHEFSTVPGVKEDVTDLILNLKELVVSSDNDEPTV
MYLRKQGPGEVTAADIAPPAGVEVHNPDLHLATLNDKGKLEIELTVERGRGYVSAAQNKQ
PGQEIGRIPIDSIYSPVLKVTYKVEATRVEQRTDFDRLIVDVETKQSISPRDAMASAGKT
LVGLFGLAQELNAEAEGVDIGPSAADAALAADLALPIEEMDLTVRSYNCLKREGIHTIGE
LVSRSEADLLDIRNFGQKSIDEVKTKLGAMGLQLKDSPPGFDPRQAVDTYGTDTYNPSFS
DPSDDGREFVETEQY
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgcccccgtgccggctcctcttcaggggcttccacggcgtcatatggcggtcgccgtgt
tcggaaggaagttctctcatgctgatcgctcagcgtccctcgctcgccgaggacccgatc
tccgagttccggtcgcgcttcgtgatcgagccgctcgagccgggcttcggctacaccctc
ggcaactcgctgcgccgcaccctgctgtcctccatcccgggcgcggccgtgacgagtatc
cgggtggacggcgtcctccacgagttctccaccgttcccggggtcaaggaggacgtgacc
gacctgatcctgaacctcaaggaactggtcgtcagctccgacaacgacgagccgaccgtg
atgtacctgcgcaagcagggccccggtgaggtcaccgcggccgacatcgcccccccggcc
ggcgtcgaggtgcacaaccccgacctgcacctggccaccctcaacgacaagggcaagctc
gagatcgagctgaccgtcgagcggggccgtggctatgtcagcgccgcccagaacaagcag
ccgggccaggagatcggtcgcattccgatcgactccatctactccccggtgctgaaggtc
acctacaaggtcgaggcgacccgtgtggagcagcgcacggacttcgaccggctcatcgtc
gacgtggagacgaagcagtcgatctccccacgggacgcgatggccagcgccggcaagacc
ctcgtcggcctgttcgggctggcccaggagctcaacgccgaggcggagggcgtcgacatc
ggcccgtccgcggcggacgctgccctggccgccgacctggcgctgccgatcgaggagatg
gacctgaccgtccgctcgtacaactgcctcaagcgcgagggcatccacaccatcggtgag
ctggtgtcccgcagcgaggcggacctgctcgacatccgcaacttcgggcagaagtcgatc
gacgaggtcaagaccaagctgggtgccatgggcctgcagctcaaggactccccgcccggg
ttcgacccgcgccaggccgtcgacacgtacggcaccgacacgtacaacccgtcgttctcc
gacccgtccgatgacggtcgcgagttcgtcgagaccgaacagtactga
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