Parafrankia sp. EAN1pec: Franean1_6056
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Entry
Franean1_6056 CDS
T00608
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fre
Parafrankia sp. EAN1pec
Pathway
fre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Franean1_6056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fre03021
]
Franean1_6056
03400 DNA repair and recombination proteins [BR:
fre03400
]
Franean1_6056
Enzymes [BR:
fre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Franean1_6056
Transcription machinery [BR:
fre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Franean1_6056
DNA repair and recombination proteins [BR:
fre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Franean1_6056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ABW15400
UniProt:
A8LC63
LinkDB
All DBs
Position
complement(7368859..7372749)
Genome browser
AA seq
1296 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITKVDIDSRHRDLPTLEARIGVEKQQLEDKKNADVETRQRKLEED
LAQLEAEGAKGDARRKVRESAEREMRQIRDRSQRKIDDLDRVFDRFKNMKVQDLEPDELL
FRELRDRFGQYFEGGMGAEALQHRLADFDLAAEAESLRETIRSGKGQKKARALKRLKVVS
AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSRVSEGAIGEGR
FFSSVAEAQMAFDAREIHLQARIQVRLRESTPPAEWAPPADWLPGDPFTLETTFGRCLLN
EALPEGYPFINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSAGFYWATRSGVTVAIE
DVVAPPNKAQILDEYEQRAERVEKQFGRGFLSDEERRSELVQIWTEATNKIAEAMEANFP
ETNPVYTLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKANFREGLTVVEYFISTH
GARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGILTRIARKGPDGVLVRDR
YAETSAYARSLASDAVDAQGEVVVPAGADAGDVVIGQIIEAGIESVRVRSALTCESRMGV
CAHCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGGVAGDDITQGLPRVVE
LFEARSPKGKAPISEVTGRVKIEETEKTFKVVIVPDDGSEEIAYPVSRRSRLRVREGERV
EVGAQLIDGAVDPHEVLRILGPRQVQLHLVDQVQEVYRSQGVSIHDKHIEIIIRQMLKRV
NVLESGETTLLPGELVERARFEGENRRVVEIGGQPASARPVLMGITKASLATESWLSAAS
FQETTRVLTDAAINARSDSLVGLKENVIIGKLIPAGTGISRYRNIRVEPTDEARAAMYSV
SGYEDGASVEYGAFGAGSGQAVPLDEFDYRSSGDYR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
ttgctggacgtcaacttcttcgacgagctgcgcatcggcctggccaccgcggacgacatc
cgccagtggtcgttcggtgaggtcaagaagccggagacgatcaactaccgcaccctcaag
ccggaaaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcgggaagtacaagcgggtccggttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgccgcgagcggatgggccacatcgagctcgccgccccc
gtcacccacatctggtacttcaagggcgtgccgagccgtctcggctacctgctcgatctg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacaaaggtcgac
atcgactcccggcaccgcgacctgccgaccctcgaggcccgcatcggtgtcgagaagcag
cagctcgaggacaagaagaacgccgacgtcgagacccgccagcgcaagctggaggaggac
ctcgcgcagctcgaggccgaaggcgccaagggcgacgcccgccgcaaggtgcgcgagtcg
gccgagcgcgagatgcgccagatccgtgaccgctcccagcgcaagatcgacgacctcgac
cgggtcttcgatcggttcaagaacatgaaggtccaggacctcgagccggatgagctgctc
ttccgcgagctgcgcgaccggttcggccagtacttcgagggcggcatgggcgccgaggcg
ctgcagcaccggctcgccgacttcgatctggccgccgaggcggagtcgctgcgcgagacc
atccgcagcggcaaggggcagaagaaggcccgcgcgctcaagcggctcaaggtcgtgtcg
gcgttcctgaacacccgcaactccccgatggggatggtgctcgactgcgttccggtgatc
ccgccggacctgcggccgatggtccagctcgacggtggccggttcgccacctccgacctg
aacgacctgtaccgccgggtgatcaaccggaacaaccggctcaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ttgttcgacaacggccgccgcggccggcccgtcaccgggcccggcaaccgtccgctcaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtagagcgggcccgc
ccggtcgtgtgggacgtcctcgaagaggtcatcaccgagcaccccgtgctgctcaaccgg
gcgccgaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcccggatcctgatgctg
tcgagcaacaacatcctgtcgccggcgtcgggccgtccgctggccatgcccagcctcgac
atggtcaccggggtgttccacctgtcccgggtgtccgagggtgcgatcggcgagggccgg
ttcttctccagtgtcgccgaggcccagatggccttcgacgcgcgggagatccacctgcag
gcccgcatccaggtgcggctgcgggagagcacgccccccgccgagtgggcgccgcccgcc
gactggctgccgggtgacccgttcaccctggagaccacgttcgggcgctgcctgctcaac
gaggcgctgccggagggctaccccttcatcaacgcccagctgaacaagaaggcgcaggcg
gcgatcgtcaacgacctcgccgagcggtacccgaagatccaggtcgcggcgacgctggac
gccctcaagagcgccggtttctactgggccacccggtccggtgtgacggtcgcgatcgag
gacgtcgtggctccgccgaacaaggcccagatcctcgacgagtacgagcagcgggccgag
cgggtcgagaagcagttcggccgcggtttcctctccgacgaggagcgccgcagcgagctg
gtgcagatctggaccgaggcgacgaacaagatcgccgaggccatggaggcgaacttcccg
gagaccaacccggtctacacgctggtcaactccggggccgccggaaacatgatgcagatc
cggcagctcgccggcatgcgcggactggtctccaaccccaagggtgagatcatcccgcgg
ccgatcaaggcgaacttccgcgagggcctcaccgtcgtcgagtacttcatctccacgcac
ggtgcccgtaagggtctcgccgacaccgccctgcggaccgccgactcgggctacctgacc
cgtcgtctggtggacgtcagccaggacgtcatcgtccgcgaggaggactgcggcaccgag
cgcggcatcctgacccggatcgcccgcaagggaccggacggggtgctggtgcgcgaccgc
tacgcggagacctccgcgtacgcccgctcgctcgcctccgacgccgtggacgcccagggt
gaggtcgtcgtcccggccggcgccgacgccggcgacgtggtcatcggccagatcatcgag
gccgggatcgagtcggtgcgggtgcgctcggcgctcacctgcgagtcgcggatgggtgtc
tgcgcgcactgctacggccgctcgctggccaccggcaagctggtggacgtcggtgaggcc
gtcggcatcgtcgccgcccagtccatcggtgagccgggaacccagctcacgatgcgtacc
ttccacagcggtggcgtcgccggtgacgacatcacccagggtctgccgcgtgtcgtcgag
ctgttcgaggcccgtagccccaagggcaaggccccgatcagcgaggtgaccggccgggtc
aagatcgaggagacggagaagaccttcaaggtcgtcatcgtccccgacgacggcagcgag
gagatcgcctacccggtctcccgccgctcccggctgcgggtccgcgagggcgagcgggtc
gaggtcggcgcccagctgatcgacggcgccgtcgacccgcacgaggtgctgcgcatcctc
ggcccgcgccaggtccagctccacctggtcgaccaggtccaggaggtgtaccggtcgcag
ggtgtgtcgatccacgacaagcacatcgagatcatcatccgccagatgctcaagcgggtg
aacgtgctcgagtcgggggagaccacactgctgccgggtgagctcgtcgagcgcgcccgc
ttcgagggcgagaaccggcgcgtggtggagatcggcggccagccggcctcggcccgcccg
gtgctcatgggcatcaccaaggcctcgctggccaccgagtcgtggctgtcggcggcgtcc
ttccaggagaccacccgggtgctcaccgacgcggcgatcaacgcccgctcggactcgctg
gtcggcctcaaggagaacgtcatcatcggaaagctcatcccggcgggtaccggcatctcc
cggtaccgcaacatccgggtggagccgaccgacgaggcgcgcgcggcgatgtactcggtc
agcggctacgaggacggcgcctcggtcgagtacggcgccttcggtgccggatccggccag
gccgtcccgctggacgagttcgactaccgcagctcgggcgactaccgctga
DBGET
integrated database retrieval system
