Parafrankia sp. EAN1pec: Franean1_6470
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Entry
Franean1_6470 CDS
T00608
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fre
Parafrankia sp. EAN1pec
Pathway
fre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Franean1_6470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fre03019
]
Franean1_6470
03400 DNA repair and recombination proteins [BR:
fre03400
]
Franean1_6470
Enzymes [BR:
fre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Franean1_6470
Messenger RNA biogenesis [BR:
fre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Franean1_6470
DNA repair and recombination proteins [BR:
fre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Franean1_6470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
MarR_2
DUF3553
Cas3-like_C_2
MarR
Rrf2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ABW15807
LinkDB
All DBs
Position
complement(7864485..7866359)
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AA seq
624 aa
AA seq
DB search
MPEEAVVAEAVVADTASPDPPRDDEEHAEEHTELDDLLRAVAREGFGFAELRPGQLEAMR
AVTAGRDMLCVLPTGGGKSAVYQIPALLTAGPTVVVSPLIALQRDQVRGLTERLGGLLDA
VPAGPGTAARPDAGQSGARQPDADAPAVAANSQSGRGAALAAIDAVRHGRAEFLFLAPEQ
LARDDVREALREARPSLFVVDEAHCISSWGHDFRPDYARLGQVIDDLGHPVVVALTATAS
PPVRREIAERLRLEDPAEIVRGFDRPEITLSVESFVDDDEKKARLVERIAAETKPGLVYT
ATRRGAEDLAAELADLGLTASAYHAGLRAARRREVEEDFMADRCDVVVATTAFGMGIDKP
NVRFVIHAEVADSIDSYYQEIGRAGRDGQPAVAVLFYRPEDLGLRRFFASSRPDETALRR
VAVLLGHAEEPVSARALADAAGVGDTALTRMVDLLERADAVTVHDDGRIERSAGAPEPEQ
AAGRAVELAAARVEFERSRVDMMRGYAETRDCRRRYLLAYFGDTSPAACGNCDVCRSRLP
GQRVPGGEGGAAAAAGSPAPVGDNEATAEVSPFPAGLAVRHVRWGPGQVMKEDGDRITVL
FDEVGYRTLSVAAVTERGLLAVAD
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaggaggcggtggtggccgaggcggtggtggcggacaccgccagccccgatccg
ccgcgggacgacgaggaacacgcagaggaacacacagagctggacgacctgctgcgggcc
gtggcccgggagggcttcgggttcgccgagctgcgtcccggccaactcgaggcgatgcgg
gccgtcaccgccggccgggacatgctgtgcgtcctgccgaccgggggtggcaagtcggcc
gtttaccagattccggccctgctcacggcggggccgaccgtggtcgtctcgccgctcatc
gcgctgcagcgcgaccaggtgcgcgggctcaccgaacgcctgggcggcctgctggacgcg
gtgcccgccggccccgggaccgccgccagacccgacgccggccagtccggtgcgcgtcag
cctgacgctgacgcgcccgcggtggcggcgaactcgcagagcgggcgcggcgcggcgctc
gcggcgatcgacgccgtccgccacggccgggccgagttcctgttccttgctcccgagcag
ctcgcccgcgacgacgtccgggaggcgcttcgcgaggcgcggccctccctgttcgtcgtg
gacgaggcgcactgcatctccagctggggccacgacttccgccccgactacgcccgcctg
ggccaggtgatcgacgacctcggccatccggtggtcgtcgcgctgacagccaccgcgtcg
ccgccggtgcgccgggagatagccgagcgcctgcggctcgaggatccggcggagatcgtc
cgcggcttcgaccgcccggagatcaccctgagtgtcgagtcgttcgtcgacgacgacgag
aagaaggcccggctggtcgagcggatcgccgccgagaccaagcccggcctggtctacacg
gcgacccggcgtggcgccgaggatctcgccgccgagctcgcggacctcgggctcaccgcg
agcgcgtaccacgccgggctacgcgcggcgcgccgccgtgaggtcgaggaggacttcatg
gccgaccggtgcgacgtcgtcgtggcgacgaccgcgttcggcatgggcatcgacaagccc
aacgtcaggtttgtgatccacgccgaggtggccgactcgatcgactcctactaccaggag
atcggacgcgccggccgcgacggccagccggcggtcgcggtcctgttctaccggcccgag
gacctgggcctgcgtcgcttcttcgcctcgtcacgcccggacgagaccgccctgcgccgc
gtcgccgtgctgctcggccacgccgaggaaccggtgagcgcgcgcgccctggccgacgcc
gccggggtcggcgacaccgcgctgacccgcatggtggacctgctcgaacgggccgacgcg
gtcaccgtccacgacgacggccgcatcgagcgcagtgccggtgcgccggaacccgagcag
gccgcgggccgcgccgtcgaactggccgcggcgcgggtcgagttcgagcggtcgcgggtc
gacatgatgcgcgggtacgcggagacccgcgactgccggcggcgttacctgctcgcctac
ttcggcgacacgtcccccgccgcctgcgggaactgtgacgtgtgccggtcccgtctgccc
gggcagcgggtgccgggcggcgagggcggggccgcggccgccgccggttccccggcgccg
gtgggcgacaacgaggccacggcggaggtctcgccgttcccggccgggctggccgtccgt
catgtgcggtgggggcccggccaggtgatgaaggaggacggcgaccgcatcaccgtcctg
ttcgacgaggtcggataccgcacgctgtcggtggcggcggtgaccgagcggggcctgctg
gcggtcgccgactag
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