Candidatus Francisella endociliophora: LO80_01995
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Entry
LO80_01995 CDS
T03403
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
frf
Candidatus Francisella endociliophora
Pathway
frf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LO80_01995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frf03019
]
LO80_01995
03009 Ribosome biogenesis [BR:
frf03009
]
LO80_01995
Enzymes [BR:
frf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LO80_01995
Messenger RNA biogenesis [BR:
frf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LO80_01995
Ribosome biogenesis [BR:
frf03009
]
Prokaryotic type
rRNA helicases
LO80_01995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Utp25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AIT08870
UniProt:
A0A097EMT1
LinkDB
All DBs
Position
complement(429049..430776)
Genome browser
AA seq
575 aa
AA seq
DB search
MNSETKKDFSQLGLSQDIVDTVTKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNMDFESRDRAPQVLVLAPTRELAIQVAEQFEAFAKSIPNLDVACIYGGQEYGS
QIRALKRGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHV
SDECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLEVEETDGVIIFVKTKTSTIEVADNLKALGYKAAAINGDMQQSQREYIVDQFRNSKSD
ILVATDVVARGIDLERISHVVNYDLPNDADTYVHRIGRTGRAGREGVSISLVPLKDMRFL
RIVERFTSSPMQEIFMPSAKDLADSRIANFKTRIASAIEKNKSLDKYKEIITGIRDELEL
DSDDLLAVLTLLTQGKKSFFPREIQARDDRPRRDRNDRNSRDGRRNDRFERRGDRNDRGD
RGDRRFDRSERKPRRAPNIDLTTYKLEVGRDNDVQPRNIVGAIANEGNIDSKHICNISIQ
KDYTLVDLPANLSPKVVGHLKKVWVAGKKLNITAQ
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagccagcttgggctaagtcaagatattgtagat
actgttactaaattaggatacgagaatcctactcctatccaacagtatgctattccatat
atcttatcgggtagagatgtgctaggtcaagcacaaacgggtacaggtaaaacagcagcg
tttgcattacctttaataaataatatggattttgaatctagagatagagctcctcaagtt
ttagtattagctccaactagagagttggctatacaagttgcagaacagtttgaagctttt
gcaaaaagtattcctaatttagatgtcgcttgtatatatggtggtcaagagtatggctca
caaattagagcacttaaaagaggtgttaaagttgtagtcggtactacaggtcgtgtaatg
gatcatattgaaaaaggcacattacagcttgataacctaagagcgttagtacttgatgaa
gctgatgaaatgcttagaatgggctttattgatgatgttaggtatgtattaagtcacgta
tctgatgagtgtcaaaggttgcttttctcagcgactatccctactgatattgctgatatc
attcaagaatatcttagaaatccttgtaaaatacaagtaaaagctaagacaaaaacagct
aatactgttacacaaaaatttatagtaatcaaaggctttagaaaaattgatgctcttgat
agactgcttgaggttgaagagactgatggcgtaataatttttgtaaaaactaaaacaagt
actatagaagttgcggataatcttaaagcactaggctataaagctgcagctatcaatggt
gatatgcaacaatcgcaaagagagtatattgtagatcagtttagaaattctaaatctgat
attttggtagctactgatgttgtggctcgtggtattgatttagagagaatttctcatgtg
gttaactatgatcttcctaatgatgctgatacttatgtacacagaattggtcgtacaggt
agagcagggcgtgaaggtgtatctatttcattagttcctttaaaagatatgcgattcttg
agaattgttgagaggtttactagttcgccgatgcaagaaatatttatgccaagtgcaaaa
gatcttgcagatagtagaattgcaaacttcaaaactagaattgcttcagctatcgagaaa
aataaatctcttgataagtataaagaaattatcacaggtattcgtgacgaattagagtta
gactcagatgatcttttagctgtacttacattgcttactcaaggtaagaaatcattcttc
ccaagagaaatacaagctagagatgatagacctcgtagagatagaaatgacagaaactct
agagatggtagaagaaatgataggtttgagcgtagaggcgaccgtaatgatagaggtgat
cgtggtgatagacgctttgatagatcagagagaaaacctcgcagagctccaaatatagat
ttgactacatataagttagaagttggtcgtgataatgatgttcagcctagaaatatcgtt
ggtgctatagctaatgaaggaaatattgatagtaaacatatttgtaatatttctattcaa
aaagactatactctagttgatctacctgcaaacttatctcctaaagttgtcggtcatctt
aaaaaagtttgggtagctggtaaaaaattaaacatcactgctcaataa
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