Candidatus Francisella endociliophora: LO80_02820
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Entry
LO80_02820 CDS
T03403
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
frf
Candidatus Francisella endociliophora
Pathway
frf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
frf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LO80_02820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frf03019
]
LO80_02820
03009 Ribosome biogenesis [BR:
frf03009
]
LO80_02820
Enzymes [BR:
frf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LO80_02820
Messenger RNA biogenesis [BR:
frf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LO80_02820
Ribosome biogenesis [BR:
frf03009
]
Prokaryotic type
rRNA processing factors
LO80_02820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Flu_C_NS1
Antiterm
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AIT09014
UniProt:
A0A097EN73
LinkDB
All DBs
Position
580970..583627
Genome browser
AA seq
885 aa
AA seq
DB search
MKKILINSNSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGDNIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPDGGGISRRVEGEDRDRLKKYLKDLNIPKNMSVIARTACVECSFEELKHD
FDNLVELWKSISQTYHKIKKPALLHKESDIIIRTVRDHLREDVKEIIVDSKECFDDVKRQ
LGLLRQSFDINKVKLYSEDLPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAVD
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MDALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAMKDDTNEIRVQVPVDIAAYILNEKRDNIVDIEKITNVKVMLIPNFNMESPKF
QMQRIWGTSYKSNRTSTDLIEDVYNVEVPKAGKKKVAAVDLVKNTEKKQNSNKDSKPAEQ
KQEQKTNKPVNNTTKDQQPKLAEPKKKGFFAKLAGVFSAKAEEKVEEAPVKQQPKQHNNK
NNNSQKPQHNKQNRENNNQRNDRNNNDRNNNDRGDRNNKGQNSQRPQHNKQNRENNNQRN
DRNNNDRNNNDRGDRNKNKRSNDKFDKKSNNRNGRSNNLNLNNAEEVVDITKVKYQNQNT
ATTVDNIKKVISKNPEEFVSVMVKDVLENYDSLKDDGAKKVATEEKAKTHKYLRFETVSV
DTAITSAQEASKPKKVEEVASAVKEEAKTPKANQEAEKAPKQKENKKPAKDKDTKKDSVK
SKPKKDKQTSTAKSDKKEAPAKDTKTQAEYINYSPAVDFESQALV
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatactaatcaatagtaacagtagcgaagaaactagaattgctacgcttgat
aatggaaaactaatagatttagatattgaaaatgtcgatagagagcaaaaaaaagctaat
atatacaaaggatatatttcaagaattgagcctagtttaaatgcaatatttgtaaactat
ggtgaagaaaaaaatggtttcttaccttttaaagaagtatctgaatattacctaaaagat
gtaccaaatggagacaatattgcccctttgctttccgaaggacaagagttaatcgttcaa
atagacaaagaagaacgcggtgacaaaggagccgctcttactacatttattactctagct
ggctcttacatggttctattaccaaacaatcctgatggtggcggtatttctcgtcgtgtt
gaaggtgaagatagagatagacttaaaaaatatcttaaagatctaaacatccctaaaaat
atgagcgtaattgctagaacagcttgtgttgagtgttcttttgaagaactaaagcatgac
tttgataatcttgttgaattatggaaatcaatttctcaaacttatcacaaaatcaaaaaa
cctgctctattacataaagaaagcgatattataatcagaacagtaagagaccacttaaga
gaagatgtcaaagaaatcattgtagattcaaaagagtgctttgatgatgtgaaaagacaa
cttggtttattaagacagagctttgacatcaacaaggttaaactttacagtgaagattta
ccaatctttgcacaatttggtattgatcaacagatcgaaaatgcttataaaagagaaatt
cgtctaccatctggtggctctatagtaatcgacactacagaagcattagtcgctgttgat
gtaaactcatctcgtgcaaataaagcagaagatgttgaaactacagctttcaaaacgaac
ttagaagctgctgaagaagtagctcgccaacttagaattagagacttaggtggtcttgtt
attgttgactttatcgacatgtctttctatccaaatagaaaacaagttgaagaaaaatta
atggacgctcttcaacaagacaaagctcgtatccaaatgtctcgcatctctaaacttggt
ttagttgagatttctagacagcgtctaagctcatcaataaacgaaagtgtcatgcagaaa
tgtcctcgttgtgaaggtcatggtttcattaaaacaactcaagctacagctcttactata
ctacgtaaaattagagccgaagctatgaaagatgatactaatgaaatcagagttcaagtt
cctgtggatatagctgcatatatactaaatgaaaaaagagataatattgttgatattgaa
aaaatcactaatgttaaagtaatgcttatccctaatttcaatatggaatctccaaaattc
caaatgcaaagaatctggggtactagctataaatcaaatcgtacaagtactgatttaatt
gaagatgtatacaatgttgaagttccaaaagcaggtaagaaaaaggtagctgctgttgat
ttagtaaaaaacactgaaaaaaagcaaaattctaacaaagattctaaaccagcagaacaa
aaacaggagcaaaaaacaaataagcctgtaaataatacaacaaaagatcaacaacctaag
ttagcagaacctaagaaaaaaggtttctttgctaaactagctggtgtgttctccgctaaa
gcagaagaaaaagttgaagaagctcctgtaaaacagcaacctaaacagcataacaataaa
aataataactctcaaaaacctcagcataacaagcagaacagagagaacaataatcaacgc
aatgatcgcaacaataacgatagaaataacaatgacagaggcgatcgtaataacaaaggg
caaaactcccaaagacctcaacataacaaacaaaatagagagaataataatcaacgcaat
gatcgcaacaataatgatagaaataacaatgacagaggcgatcgtaataagaataaaaga
agtaatgacaaatttgataaaaaatcaaataatcgtaacggcagaagcaacaacttaaat
ttaaataatgctgaggaagttgtagatattacaaaagtaaaatatcagaatcaaaacact
gctactacagtagataacattaaaaaagttatctctaaaaacccagaagaatttgtttct
gtaatggttaaagatgttttagaaaattatgatagcttaaaggacgatggtgctaaaaaa
gtagcgactgaagagaaggcaaaaactcataaatatcttaggtttgaaacagtatctgtt
gatactgctataacttcagctcaagaagctagtaagcctaaaaaagtggaggaagttgcc
tctgctgttaaagaggaagctaaaacgcctaaagctaatcaagaagcagaaaaagctcct
aaacaaaaagagaataaaaaacctgctaaagataaggatactaaaaaagattctgttaaa
agcaagcctaaaaaggataagcaaacttcaacagctaaaagtgataaaaaagaagctcca
gcaaaagatactaaaactcaagctgagtatataaactattctccagctgttgattttgaa
tctcaagcactagtataa
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