Candidatus Francisella endociliophora: LO80_03545
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Entry
LO80_03545 CDS
T03403
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
frf
Candidatus Francisella endociliophora
Pathway
frf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
frf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LO80_03545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
frf03400
]
LO80_03545
Enzymes [BR:
frf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LO80_03545
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LO80_03545
DNA repair and recombination proteins [BR:
frf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LO80_03545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AIT09131
UniProt:
A0A097ENI9
LinkDB
All DBs
Position
703316..704185
Genome browser
AA seq
289 aa
AA seq
DB search
MVSYSHFNFYNNIDFMPELPEVETVKRGLTKNIIGKKILNIEINTDKLRYPLIKSELLTL
QNREIKNIHRRGKHLILFLAENLQIIIHLGMSGVIKTTETTIYNKVKHDHIILQLSDNLT
LSYNDPRKFGYWLINNNLDPLKHKVLATHGVEPLTDDFNTEYLLTKLQKTSRKIKQTIMD
NSIVVGVGNIYASEALFDSNILPTRASNTITKKEIKKLIDSIKKILAKAIAKGGTTLKDY
KNTEGKPGYFTQQLNVYGRANQECYICNTKIESLIIAQRNTFYCKKCQK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggtatcatatagtcactttaatttttataacaatattgattttatgccagaacttcct
gaggtagaaacagtcaaaagaggtttaaccaaaaatattattggaaaaaaaatattaaat
atagaaattaacacagacaaactacgttatcctctaataaaaagcgaactcttaacactc
caaaatagagagattaaaaatattcatagaagaggaaaacatctaatacttttcttagct
gaaaacttacaaataattattcatctaggtatgtctggagtaatcaaaactacagaaaca
actatttataataaagtaaaacatgatcatataattctacagttatctgataatttaaca
ctatcatataatgatccacgtaaatttggctactggttaataaataacaacttagaccct
cttaaacataaagttttagcaactcatggagttgagccattaactgatgattttaatact
gagtacctgcttacaaaactacaaaaaacctctcgcaaaatcaaacaaacaattatggat
aattccatagttgtaggtgtcggtaatatttatgctagcgaggcgttatttgatagtaat
attttaccaactagagcatctaataccattacgaaaaaagaaattaaaaaattgatagac
tcaatcaaaaaaatcttagcaaaagctattgctaaaggtggcaccacactcaaagattat
aaaaatactgaaggcaaacctggttatttcacacaacaactaaatgtttatgggcgagca
aaccaggaatgctacatttgtaatacaaaaattgaaagtttaattatagcacaaagaaat
actttttattgtaagaaatgtcaaaagtaa
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