Candidatus Francisella endociliophora: LO80_08490
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Entry
LO80_08490 CDS
T03403
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
frf
Candidatus Francisella endociliophora
Brite
KEGG Orthology (KO) [BR:
frf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
frf03019
]
LO80_08490
Enzymes [BR:
frf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LO80_08490
Messenger RNA biogenesis [BR:
frf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LO80_08490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
RsgA_GTPase
nSTAND3
ABC_tran
HA2_N
T2SSE
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AIT10003
UniProt:
A0A097EQZ6
LinkDB
All DBs
Position
1726588..1730376
Genome browser
AA seq
1262 aa
AA seq
DB search
MKNNIELLNQIPTKLRGKYISLSRNKRISEKDLILEFERIITETNQKILPKINYPDLPVA
EKVEDIKKLIEENQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRIAARSIAN
RVASEIGDQSKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDRFLSQYEAIIIDEAHER
SLNIDFLLGCIKKILPFRPDLKVIITSATIDHQKFTSYFQKAKEITVSGRTYPVEIHYQN
DEDFDTFSMQERILYAIDEFGRGDVLVFLPTERDIHETLAYLNKQDLRFTEVLPLFSRLS
NKDQNKIFNPEGSTRRVILATNVAETSLTVPRIKYVIDSGLARVSRYSYRTKVQRLPIEK
ISQSSANQRAGRCGRLSAGVCVRLYSEEDFNNRKEYTDPEILRTNLASVILQMLFLKLGN
IQGFQFIDPPDSRFVKDGFKLLFELQAISELNYSKPKITADGMKMAIMPLDPKLAKIVIE
GHRQNTLREIVSIVSFLSVQDPRERPLNFQQKADEKHSVDKDKSSDFIAILNLANRLSSN
LKELSNREKKEYFKKNFISSVRFNEWNDIYRQIIEVIHGFKWKLSSNQELSYENLHKAIA
SGFLSNIGFNYENAEYLGANGLKFFIFPGSSQFKKKPKWLISSEIVETTKTYARNVAKIE
PEWLEVLANHLVKKHYDEPVWSKKRRSVVANERITLYGLEIVSKKSVQYSKINPQEAREI
FIREALVNGDFESKAYFYQQNLKLIDQVEDLENKSRRKDILVDEQVMYEHYDGLIPDDVC
SGVTFDKWLKTISKDEQQKFVFELDSLMQHDAKEVTQQKFPDALAIGEMHLPLEYHFDPL
DERDGATATVPIVFLNDINPSVLEWGVYGFLYDKFVALLRALPKNIRKNCVPVPTYAQAI
FESIDFDVDRYKPLKSVVAKHITRIVGSIVDETVWQDEELDKHLILNIKVVDEKGKTLAI
DKNINTLKQKLQNLVQKPKKNVDDKVYYDWEFDDIKQTSQIREYGINVKVYNCLEEYKDG
VKLSYKATMKEANSCMQKALKKLIKLRLQNYLSKSIKKNNLASLSMSLKLNESKDNIVDK
AIDLSFFNDSELPYTKDNFEKFYNSGIQSFDSNNSKVELLVSEIFKYKNQLDKKLNVKKV
PLNFIQIFADVRGELNELFYDDYLSQPVEYLQRYKYYIQALENRLEKAKTNLQRDKGYQI
EVDELRVKLNKKIKAKHLNGENDEVIKIKVLIKELWVSWYLQNVKTIESVSGKKVSQYIG
QI
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaataatatagaacttttaaatcaaattccaactaaacttcgcggtaaatatatt
tcactttctagaaataaaagaatatctgaaaaagacttaatccttgagtttgaaagaata
atcacagaaacaaatcaaaaaatattaccaaaaataaattatcctgatttacctgttgct
gaaaaagtcgaagacataaaaaagcttattgaggaaaatcaagtaatagttgtcgcaggt
gagacaggttctggtaagtcaacacaattgcctaaaatatgtctagatttgggtctaggt
aagaggggactaatagggcatactcaaccaagaaggattgcagctagatctatagcaaat
agagttgctagtgagataggggatcaatcaaaagtatcttttaaaattcggttctctgat
caaacatctgaaaatactttgataaaagtaatgacagatggagtgttattatctgaaatt
aaaaatgataggtttttgtctcaatatgaagcaataataattgatgaagcgcatgaaaga
agcctaaatattgattttctacttggctgtataaaaaagattttaccgtttaggcctgat
ttaaaagttattataacttcagctaccatagatcatcaaaaatttacaagttactttcaa
aaagctaaagagattacggtcagtggtagaacatatcctgtagagattcattatcaaaat
gatgaagattttgacacattttcaatgcaggagagaatcttatatgcaatcgatgagttt
ggtagaggggatgttttagtctttttaccaacagaaagagatattcatgaaacattggct
tatttgaataaacaagatttaagatttacggaagtcttacctttattttcaaggttatca
aataaagatcaaaataaaatctttaacccagaaggatcaactcgtagagttattttggct
actaatgttgctgaaacatctttgactgtaccacgtataaaatatgtcatagattcaggg
ttagctagggttagtagatatagctatcgtaccaaggtgcaacgtttaccaatagaaaag
atttcacaatctagtgcaaatcaaagagctggtcgttgtggtaggttatctgctggtgtt
tgcgtacgtttatatagtgaagaggatttcaataatcgtaaagaatatacagatccagag
attttacgcactaatttggcttctgttattttacagatgttatttttaaaattagggaat
attcaagggtttcaatttatagaccctccggattctagatttgttaaggatggttttaaa
cttttgtttgagttgcaggctatctcggaacttaattactcaaaaccaaaaattacagct
gatgggatgaaaatggctattatgccgttagatccaaaattagcaaaaatagttatagag
gggcatagacaaaatactcttagagaaatagtttcaatcgtcagctttttgagtgtacaa
gatcctcgtgagcgaccattaaattttcaacaaaaggcagatgaaaaacactctgtagat
aaagacaagtcttctgactttatcgcaatattaaatttagctaataggctaagtagtaat
ttaaaagaactttcaaatagagagaagaaagaatattttaaaaagaattttatttcatct
gttagatttaatgagtggaatgatatttatagacaaattattgaagtaattcatggattt
aagtggaaattatcttctaatcaagagttaagttatgaaaatttacataaagcaatagcg
agtggttttttaagtaatattggttttaattatgaaaatgctgaatatctaggtgctaat
ggacttaagttttttatatttccaggatcttcacagtttaagaaaaagcctaagtggtta
atctcatcagagattgttgagactactaagacctacgcacgtaatgtggcgaaaattgag
cctgaatggttagaagttttagctaatcatcttgtgaaaaaacattatgatgaaccggta
tggagtaaaaagcgtagatctgtggtagcaaatgaaagaattacactttatggtctagag
atagtctcaaaaaaatctgtccaatactcaaaaataaatccacaagaagccagagaaata
tttattcgtgaagcattagtgaatggtgattttgagtctaaagcatatttctatcagcaa
aaccttaagctaatagaccaagttgaagatcttgaaaataagtcgcgcagaaaagatatt
ttggtggatgaacaagtaatgtatgaacattatgatgggcttatccctgatgacgtttgt
agtggtgtaacttttgataaatggttaaaaaccatttctaaagatgagcaacagaagttt
gtttttgaattagatagtctgatgcaacacgatgctaaagaagttactcaacaaaagttt
cctgatgctttagctattggagagatgcatttgccattagaatatcactttgatccactt
gatgagcgagatggcgcaacagctacagtaccaattgtctttcttaatgatattaatcct
agcgtgcttgagtggggagtatatggttttttatatgataagtttgtcgcgttattaaga
gcattacccaaaaatattcgtaaaaactgtgtgccagtaccaacttatgcacaagctata
tttgagtcaatagattttgatgtagataggtataaaccattaaagtctgttgttgcaaaa
catattacaaggatagttggttctatagttgatgaaactgtttggcaagatgaagagtta
gacaaacacttaatattgaatattaaagttgttgatgaaaaaggaaaaacgctagctata
gataaaaatataaacactttaaaacaaaaacttcaaaatctagttcaaaagccaaagaaa
aatgttgatgataaagtttattatgattgggagtttgatgatattaagcaaacatctcaa
ataagagaatatggtataaatgtaaaggtatataattgccttgaagagtataaagatggt
gtgaaactttcatataaagcaactatgaaagaagctaattcttgtatgcaaaaagctttg
aagaagctaattaaactacgtttacagaattatctatcaaaaagcattaagaaaaataat
ctagcaagtttatcaatgtcattaaagctgaatgaatcaaaagataatattgttgataaa
gctatagacttgagtttttttaatgactctgagctaccttatacaaaagataattttgaa
aaattttataacagtggaatacagagctttgactcaaataactctaaagttgaattatta
gtatctgagatattcaaatataagaatcaactcgataaaaagttgaatgtcaaaaaagta
ccgcttaattttattcaaatatttgcggatgttagaggtgagctaaatgaacttttttat
gatgattatttatctcaaccagttgagtatttacagagatataaatattatattcaggct
ttagagaataggttggaaaaagctaaaactaatttgcaaagagataagggttatcaaata
gaggttgatgagcttagagtaaaactaaacaaaaaaatcaaagctaaacacttaaatggt
gaaaatgatgaagtaataaaaataaaagtcttaattaaagagctttgggtttcatggtat
ttacagaatgttaaaactattgagtcagtttctggaaagaaagttagtcaatatattggc
caaatatag
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