Pseudofrankia inefficax: FraEuI1c_0093
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Entry
FraEuI1c_0093 CDS
T01354
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FraEuI1c_0093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fri03400
]
FraEuI1c_0093
Enzymes [BR:
fri01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
FraEuI1c_0093
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
FraEuI1c_0093
DNA repair and recombination proteins [BR:
fri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FraEuI1c_0093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
DUF7573
Zn_ribbon_8
Zn_ribbon_IS1595
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
ADP78181
UniProt:
E3J3H9
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All DBs
Position
complement(110573..111451)
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AA seq
292 aa
AA seq
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MPELPEMEALASVLRDRAVGKVVTRAEPVAINALRTVSPGPADLVGATLVDATRHGKFLD
LVFAGTGGERLDLVAHLSRAGWLRWKDSQPTTPGRGGRGGLAWRLVFDDGSGFDLTEAGT
QKRLAVYLVRDPAEVPGVARLGIDPLDPAFTVEALAALLTAAGRSQVKGVLTDQSVLAGV
GNAYSDEVLWAARLSPFAPSSGLSGDQVAALHEALVGTLRAAVEAAGGLGAADLKAEKKA
NLAVHARTGEACPRCGDTVRQVSFADRSLQYCPTCQTGGRLLADRRLSRLLK
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgcccgagatggaggcgctcgcgagcgtgctgcgcgaccgcgcggtcggc
aaggtcgtcacgagggccgagccggtcgccatcaacgcactgcgcaccgtctcgcctggc
ccggccgacctggtcggcgcgaccctggtcgacgccacgcggcacggcaagttcctcgac
ctcgtcttcgccggcaccggcggcgagcggctcgacctcgtcgcgcacctgtccagggcc
ggctggctgcgctggaaggacagccagccgacgacgcccggccgcggcgggcgcggtggc
ctcgcctggcggctggtgttcgacgacgggtccggcttcgacctcaccgaggccggcacc
cagaagcggctggccgtctacctggtgcgcgacccggccgaggtgcccggtgtggcccgg
ctgggcatcgacccgctggaccccgccttcaccgtcgaggcgctggccgccttgctcacc
gccgccgggcgcagccaggtcaagggcgtactgaccgaccagtcggtcctcgccggggtc
ggcaacgcctactcggacgaggtgctgtgggcggccaggctgtccccgttcgccccgtcc
agcggcctgtccggcgatcaggtcgccgccctgcacgaagccctggtgggaacgctgcga
gcggccgtcgaggcggccggcgggctgggcgccgccgacctgaaggcggagaagaaggcc
aacctggccgtgcacgcgcggaccggcgaggcctgtccgcgctgcggcgacaccgtccgc
caggtctcgttcgcggaccgcagcctgcagtactgccctacctgccagaccggcggccgg
ctactcgccgaccgccgcctgtcccgcctgctgaagtag
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