Pseudofrankia inefficax: FraEuI1c_0645
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Entry
FraEuI1c_0645 CDS
T01354
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FraEuI1c_0645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fri03400
]
FraEuI1c_0645
Enzymes [BR:
fri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FraEuI1c_0645
DNA repair and recombination proteins [BR:
fri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FraEuI1c_0645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
YmdB
Motif
Other DBs
NCBI-ProteinID:
ADP78723
UniProt:
E3JCM7
LinkDB
All DBs
Position
810858..814505
Genome browser
AA seq
1215 aa
AA seq
DB search
MTLAPLLDALTARPGGEPALARVQDAVTASGNAGSASVGISPVDLSGPPGLRPFAVAALA
RSGRTILAVTATDREADDLTEALSSLLDPRSVALYPSWETLPHERLSPGADTVGRRLAVL
RRLAHPEILAASGPADAAASPLSVVVAPVRAVLQPQVKDLGQLEPVLLRSGDSADLADVV
ERLVGIAYHRVDLVERRGQIAVRGGILDVFPPTEEHPLRVEFFGDEIEDIRPFAVADQRA
LDVPASGGGYALFAPPCRELLLTPEVRARAARLAREHPDLVDMLDKIASGIPVEGMEALA
PVLVDDLALLLDELPAGTQVLLCDPERVRSRASELVRTSQEFLNASWSSAALGSQTPIDL
GSAAYRTLADVRSRAAELGLPWWTVSQFGVVAGADGTDSADEPVAFDVPDEAVVTSLRPP
PAYHGDTARLLADVKGWLNDSWRVLLVTAGHGPAQRLVELLREADLGARLTDDAELAPSV
VTVTQGQLVTGFTSDLLRLAVLTETDLAGARGVTTKDMRRMPSRRRKGIDPLALAVGDLV
VHEAHGVGRYIEMVTRTVAGAKREYLVLEYAKGDRLYVPTDALEQVTRYVGGEAPTLDRI
GGADWAKRKSRARKAVKEIAGELIRLYSARMAAPGYAFGPDNPWQRELEDAFPFRETPDQ
LSAIDEVKRDMERAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQH
FQTFSERYAAFPVIVKAMSRFNTATEQKAVLAGLADGTVDVVIGTHRLLSNETRFKDLGL
VIVDEEQRFGVEHKEHLKKMRTAVDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHP
VLTSVSPYDQRQVAAAIRRELLREGQVFFIHNRVESIDRAAARLRELVPEARIATAHGQL
SEDVLEKVMVSFWERKFDVLVCTTIVESGLDISNANTLIVERADNFGLSQLHQLRGRVGR
GRERAYAYFLYPPDRPLTETAHDRLATIALNTDLGAGMAVAMKDLEIRGAGNLLGGEQSG
HIAAIGFDLYVRMVGEAVADFKGAAPEELPEVKVELPVDASLPHDYVGAERLRLDAYRRL
AAASSEEDLAEVRAELVDRFGPLPEVVENLFAVASLRVLARGYGLSEITLAGKQIRFAQL
ELRESQTLRLQRLYKGALTKPAAKTVLVPVPTQTGRIGSPALRDKPLLAWAADLLSAILG
DSISAAANAAATNRP
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcgcgccgctgctcgacgctctcactgcccgcccgggcggcgaaccggcgctg
gcccgtgtccaggacgccgtcaccgcctcaggaaacgccggctcggcttcggtgggtatc
agcccggtcgacctgtcgggcccgcccgggctgcggccgttcgccgtcgcggcgctggcc
cgctcggggcgcacgatcctggcggtcaccgcgaccgaccgcgaggccgacgacctcacc
gaggctctgagcagcctgctggacccgaggtcggtcgcgctctacccgagctgggagacg
ctcccgcacgagcgtctgtcgccgggcgcggacaccgtcgggcgccggctggccgtgctg
cgccggctcgcccacccggagatcctggccgccagcggtccggccgacgccgcggccagc
ccgctgtcggtggtcgtcgcccccgtgcgagcggtgctgcagccgcaggtcaaggacctc
ggccagctggagccggtgctgctgcgcagcggcgacagcgccgatctcgcggacgtcgtc
gagcggctggtcgggatcgcgtaccaccgggtcgacctggtcgagcgccgcggccagatc
gcggtccgcggcggcatcctggacgtcttcccgccgaccgaggagcacccgctgcgggtc
gagttcttcggcgacgagatcgaggacatccggccgttcgcggtggccgatcagcgcgcg
ctcgacgtcccggccagcgggggcggctacgccctgttcgcgccgccctgccgggagctg
ctgctgaccccggaggtgcgggcccgggcggcccggctcgcccgggagcacccggatctc
gtcgacatgctcgacaagatcgcctccggcatcccggtggagggcatggaggcgctggcg
ccggtcctcgtcgacgacctggcgctactgctcgacgagctgcccgccggcacccaggtg
ctgctgtgcgaccccgagcgggtccggtcccgggcgtccgagctggtccgcaccagccag
gagttcctgaacgcctcgtggagctctgccgcgctggggtcccagaccccgatcgacctg
ggctcggcggcctaccgcacgctggccgacgtccggtctcgagccgccgagctcggcctg
ccctggtggaccgtcagccagttcggcgtggtggccggcgccgacggcacggactcggct
gacgagccggtcgccttcgacgtccccgacgaggcggtggtcaccagcctgcgcccgccg
cccgcctaccacggcgacaccgcccggctgctcgccgacgtcaagggctggctcaacgac
tcctggcgcgtcctgctggtcacggctggccacggcccggcgcagcggctggtcgagctg
ctgcgcgaggccgacctcggcgcccggctcaccgacgacgccgagctcgcgccgtccgtc
gtcacggtcacccagggtcagctggtcaccggcttcaccagcgacctgctgcgcctggcc
gtgctgaccgagaccgacctggccggtgcccgcggcgtcaccaccaaggacatgcgccgg
atgccgagccggcggcgcaagggcatcgacccgctcgcgctggccgtcggcgacctggtc
gtccacgaggcgcacggcgtcggccggtacatcgagatggtcacccgcacggtggccggg
gccaagcgcgagtacctcgtcctggagtacgcgaagggcgaccggctctacgtccccacg
gacgccctggagcaggtcacccgctacgtcggcggcgaggcgccgacgctggaccggatc
ggcggggccgactgggccaagcgcaagagccgggcccgcaaggcggtcaaggagatcgcc
ggcgagctgatccggctctacagcgcccggatggccgcccccgggtacgcgttcggcccg
gacaacccgtggcagcgcgagctggaggatgccttcccgttccgggagacccccgaccag
ctctccgcgatcgacgaggtcaagcgggacatggagcgcgcggtcccgatggaccgggtg
atctgcggtgacgtcggctacggcaagaccgagatcgccgtgcgggccgcgttcaaggcg
gtgcaggacggcaagcaggtggcagtgctggtgccgaccacgctgctcgtccagcagcat
ttccagacgttctcggagcgctacgcggcgttcccggtgatcgtcaaggcgatgagccgc
ttcaacacggcgaccgagcagaaggcggtgctggccggcctggccgacggcaccgtcgac
gtcgtcatcggcacccaccggctgctgtccaacgagaccaggttcaaggacctgggcctc
gtcatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcacctgaagaagatg
cggacggcggtggacgtgctcacgatgagcgccaccccgatcccgcggacgctggagatg
tcgatcaccggcatcagggagctctccacgatcgacaccccgccggaggagcgccacccg
gtgctcacctcggtcagcccctacgaccagcggcaggtcgccgccgcgatccgccgcgag
ctgctgcgcgagggccaggtcttcttcatccacaaccgggtcgagtcgatcgaccgggcc
gcggcccggctgcgcgagctggtccccgaggcgcggatcgcgaccgcgcacggccagctc
tccgaggacgtcctcgagaaggtgatggtctccttctgggagcgcaagttcgacgtcctg
gtctgcacgacgatcgtcgagtccggcctggacatctccaacgcgaacacgctgatcgtc
gagcgggccgacaacttcggcctgtcccagctgcaccagctgcgcgggcgggtcggccgc
ggccgggagcgggcctacgcctacttcctctacccgccagaccggccgctgacggagacc
gcgcacgaccggctcgccacgatcgcgctgaacaccgacctcggcgctggcatggcggtc
gccatgaaggacctggagatccgcggcgccggcaacctgctggggggtgagcagtccggg
cacatcgcggcgatcggcttcgacctgtacgtccggatggtcggcgaggcggtcgcggac
ttcaagggcgccgcgcccgaggagctgcccgaggtcaaggtcgagcttcccgtcgacgcg
agcctgccgcacgactacgtcggggccgagcggctgcgcctcgacgcctaccgccggctg
gccgccgcgtccagcgaggaggatctcgccgaggtgcgcgccgagctggtcgaccggttc
ggcccgctgccggaggtggtggagaacctgttcgccgtcgcctcgctgcgggtgctcgcc
cgtggttacggcctgtcggagatcacgctggcgggcaagcagatccggttcgcccagctc
gagctgcgggagagccagacgctccggctccagcgtctctacaagggggcgctgaccaag
ccggccgccaagaccgtcctcgtcccggtgccgacccagaccggccggatcggctcgccg
gccctgcgggacaagccgttgctggcctgggccgccgaccttctctccgccatcctcggc
gattccatcagcgcggccgcgaacgccgccgccaccaaccgcccgtaa
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