Pseudofrankia inefficax: FraEuI1c_1123
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Entry
FraEuI1c_1123 CDS
T01354
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FraEuI1c_1123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fri03019
]
FraEuI1c_1123
Messenger RNA biogenesis [BR:
fri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FraEuI1c_1123
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ADP79196
UniProt:
E3J118
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Position
1404359..1406044
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AA seq
561 aa
AA seq
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MSHPHPGLGAPPPLPVEGLRIIALGGLGEIGRNMTVFEHAGRLLIVDCGVLFPETDQPGV
DLILPDFTAIRDRLDDIEAVILTHAHEDHIGAVPYLLRERADIPLVGTRLTLALMVAKLQ
EHRIKPVTLQITEEERHSFGPFDLEFFAVNHSIPDAVAVAIRTAAGLVLHTGDFKMDQLP
LDGRLTDLGGFARLGAEGVDLLMSDSTNAEVPGFVTSEREIAPVLDGVFREAGKRIIVAC
FASHVHRVQQVLDAAEAHGRSVAFIGRSMVRNMGVARDLGLLRVPPGLIIDARDVESLPD
RNICLISTGSQGEPLSALSRMANRDHAIRIEAGDTVVLASSLIPGNEESVFRVINGLTRW
GAKVVHKGVAKVHTSGHAPAGELLYVLNATRPSNMMPVHGEWRHLRAHGVLAELTGLPPE
RIVLAEDGMVVDLVEGQATITGAVPCGYVYVDGLAVGDVRESSLKDRRILGEEGFITITA
VVDAAAGKVVAGPELLARGFSDDKVAFDKVRKLVNDGLADGMRSGMTDVNALQQLVRRIV
GRWVSDNYRRRPMIIPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagccacccgcatccggggctcggtgccccgcccccgctgcccgtagagggcctgcgg
atcatcgctctcggcggtctcggtgagatcggccggaacatgaccgtgttcgagcacgcg
ggccggctgctcatcgtcgactgtggcgtgctgttcccggagaccgaccagcccggcgtc
gacctgatcctgccggacttcaccgccatccgggaccgcctcgacgacatcgaggccgtg
atcctcacccacgcgcacgaggaccacatcggcgcggtgccctacctgctgcgcgagcgg
gccgacatcccgctggtcgggacccggctgacgctggcgctgatggtcgccaagctgcag
gagcaccggatcaagccggtcaccctccagatcaccgaggaggagcggcacagcttcggg
ccgttcgacctcgagttcttcgccgtcaaccactcgatcccggacgcggtcgcggtcgcg
atccgcaccgccgcgggcctggtgctgcacacgggcgacttcaagatggaccagctgccg
ctcgacggccggctcaccgacctcggcggcttcgcgcggctcggggccgagggcgtcgac
ctgctcatgtcggactcgacgaacgccgaggtccccggcttcgtcacctccgagcgcgag
atcgcgccggtgctcgacggcgtcttccgcgaggccggcaagcggatcatcgtggcctgc
ttcgcgagccacgtccaccgcgtccagcaggttctcgacgccgccgaggcgcacggccgc
tcggtcgcgttcatcggccgctcgatggtccgcaacatgggggtggcgcgcgatctgggc
ctgctgcgcgttccgccgggcctgatcatcgacgcccgcgacgtcgagtcgctgccggac
cgcaacatctgcctgatctccaccggatcccagggcgagccgctctcggcgctgtcccgg
atggccaaccgcgaccacgcgatccggatcgaggccggtgacaccgtcgtgctcgcctcc
agcctgatcccgggcaacgaggagtcggtcttccgggtgatcaacgggctgacccggtgg
ggcgccaaggtcgtccacaagggcgtcgccaaggtgcacacctccggccacgcgccggcg
ggcgagctgctctacgtgctgaacgcgacccggccgtcgaacatgatgccggtgcacggc
gagtggcggcacctgcgggcgcacggcgtgctcgcggagctgaccggcctcccaccggag
cggatcgtgctcgcggaggacggcatggtcgtcgacctggtcgagggccaggcgacgatc
acgggcgcggtgccgtgcggctacgtctacgtcgacggtctcgccgtgggcgacgtccgc
gagtcgagcctgaaggaccggcgcatcctgggcgaggagggcttcatcacgatcaccgcc
gtggtggacgccgccgcggggaaggtcgtcgccggcccggagctgctcgcccggggcttc
tccgacgacaaggtcgccttcgacaaggtgcgcaagctggtcaacgacggcctcgccgac
ggcatgcgctccggcatgaccgacgtcaacgccctccaacagctggtccgccgcatcgtc
ggccgctgggtgagcgacaactaccgccgccgcccgatgatcatcccggtggtcgtcgag
gtctga
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