Pseudofrankia inefficax: FraEuI1c_1140
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Entry
FraEuI1c_1140 CDS
T01354
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FraEuI1c_1140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fri03019
]
FraEuI1c_1140
Messenger RNA biogenesis [BR:
fri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FraEuI1c_1140
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
RNase_Y_N
KH_1
KH_KhpA-B
FUT8_N_cat
Motif
Other DBs
NCBI-ProteinID:
ADP79213
UniProt:
E3J135
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Position
1428109..1429803
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AA seq
564 aa
AA seq
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MIGVLVALVAVVLVAIVALALVVLRLLRAGSRAGAEPGPRPSPVADSDAAAALRAAQAEA
VAHAETVAREHATAVAREHAEATSREQAQALARKLAEADRERAEAARREAQEERDKALAE
LRGRRAELREWDSRLTQREARIEERLATLEDQTRRIESRDRELAERDAALARRAREADDL
DARRVAALEQAAGMTSSEAKTELLSVVEQHARLEAATLAREIEARAEDEAQERARRIVTI
AIQRVAAEQTAESVVSVLHLPGDEMKGRIIGREGRNIRAFESVTGVNVLIDDTPEAVLLS
CFDPVRREVGRITLSALVADGRIHPQRIEEEYERAQREVEERCVRAGKDALVEVGIGEMH
PELVVLLGRLRYRTSYGQNVLGHLVESAHLAGLMAAELRLPALIAKRGTLLHDLGKALTH
EVEGSHALVGAEIARRYGEHEDVVHAIEAHHNEVEPRSVEAVLTQAADAISGGRPGARRE
SLESYVRRLERIEQIAAERPGVERVFAMQAGREVRVMVVPEEVDDTAAHLLARDVARQIE
DELTYPGQIRVTVVRETRAIETAR
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
ttgatcggcgtgctcgtggcactcgtcgcggtggtgttggtcgccatcgtcgccctcgcc
ctggtcgtgctgcggctgttgcgggcgggctcgcgtgccggggccgagccgggtccgcgg
ccatcaccggtggccgactcagacgcggcagcggctctgcgcgccgcgcaggcggaggcc
gtcgcccacgccgagacggtcgcccgggagcacgccaccgccgtcgcccgagaacatgcc
gaagccacgtcccgcgaacaggctcaggccttggcccgcaagctcgccgaggccgaccgc
gaacgggccgaagcggcccgccgcgaggcgcaggaggaacgcgacaaggcgctggccgag
ctgcgcggccgccgggccgagctgcgcgagtgggacagccggctcacccagcgcgaggcc
cggatcgaggaacgcctggccaccctcgaggaccagacccgccggatcgagtcccgtgac
cgcgaactcgccgagcgggacgcggccctcgcccgtcgggccagggaggccgacgacctc
gacgcccgccgggtcgccgcgctcgaacaggccgccggcatgacgtcgtccgaggcgaag
accgagctgttgtcggtcgtcgagcagcacgccaggctggaggccgcgacgctggcccgc
gagatcgaggcccgggccgaggacgaggcccaggagcgggcccgccgcatcgtcaccatc
gcgatccagcgagtcgccgccgagcagaccgccgagtcggtggtctccgtcctgcatctg
ccgggcgacgagatgaagggccgcatcatcgggcgcgagggccgcaacatccgcgccttc
gagtcggtcaccggcgtgaacgtgctcatcgacgacacccccgaggcggtgctgctcagc
tgcttcgacccggtccgccgcgaggtcggccggatcaccctgtccgcgctggtcgcggac
gggcggatccatccgcagcggatcgaggaggagtacgagcgggcccagcgcgaggtcgag
gaacgctgcgtgcgcgccggcaaggacgccctggtcgaggtcggcatcggcgagatgcac
ccggagctggtcgtgctgctgggccggctgcgctaccgcaccagctatggccagaacgtg
ctgggccatctggtcgagtccgcccacctggccgggctgatggccgccgagctgcggctg
ccggctctgatcgccaagcggggcaccctgctgcacgacctcggcaaggcgctcacccac
gaggtcgagggctcgcatgccctggtgggcgccgagatcgcccgccgctacggcgagcac
gaggacgtcgtccacgccatcgaggcccatcacaacgaggtcgagccgcgttcggtcgag
gcggtgctcacccaggcggccgacgcgatctccggcggccgccccggcgcccgccgcgag
agcctcgagtcctacgtgcgccggctggagcggatcgagcagatagcagccgagcgcccc
ggcgtcgagcgggtgttcgccatgcaggccggccgggaggtccgggtgatggtcgtcccc
gaggaggtcgacgacaccgcggcccatctgctcgcccgtgacgtcgcacgccagatcgag
gacgagctcacctacccgggtcagatccgggtcacggtcgtccgcgagacccgcgccatc
gaaaccgcccgttga
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