Pseudofrankia inefficax: FraEuI1c_3995
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Entry
FraEuI1c_3995 CDS
T01354
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FraEuI1c_3995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fri03019
]
FraEuI1c_3995
03009 Ribosome biogenesis [BR:
fri03009
]
FraEuI1c_3995
Enzymes [BR:
fri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FraEuI1c_3995
Messenger RNA biogenesis [BR:
fri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FraEuI1c_3995
Ribosome biogenesis [BR:
fri03009
]
Prokaryotic type
rRNA helicases
FraEuI1c_3995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADP81999
UniProt:
E3J6S5
LinkDB
All DBs
Position
complement(4867903..4869603)
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AA seq
566 aa
AA seq
DB search
MTESEDQPTFHDLGLGSPVLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTA
AFALPILSRIDARSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYGGQAYAPQ
LAGFRRGAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTP
DAKQVALFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTR
VLEVEPFEAMIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDL
LVATDVAARGLDVERITHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLA
AIEKATRQPLTEMELPTPADVNARRVAKFHDAITAALDAPAHAVFRDLVLGYVGEHDVPL
ADIAAALAVMTRQEPGEFLLPPDTAPPAREKPARGAGRPRPVYASYRIGVGHYQRVTPGQ
IVGALANEGGLDRADFGRIDIRADYSLVELPADLSKDAQRALTRTRIAGQPLNLRPERPG
RDSGARPGANRRGNPAPSAGRTRRPT
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgagtccgaagaccagccgacgttccatgatctagggcttggttccccagtcctg
cgggccctcaccgaactcggctacgaggtgccgtcgccgatccaggccggcacgatcccc
gccctgctcgacggccgcgacgtcgtcgggctcgcccagaccgggaccggcaagaccgct
gcgttcgctctcccgatcctgtccaggatcgacgcgcgcagcaccgccacccaggcgctg
gtgctcgcgccgacccgggaactggtcctgcaggtcgccgaggcgttcggccggtacgcc
caccacctcaccggcctgcatgtgctgcccgtctacggagggcaggcctatgcgccccag
ctggccgggttccgccgcggcgcgcaggtcgtcgtcggcactcccgggcgggttatcgac
cacctggaacgcgggacactcgacctgggcggcctgcgcatgctggtcctcgatgaggcc
gacgagatgctccggatgggcttccaggaggaggtcgaccggatcctcgccgacacccca
gatgccaagcaggtcgcgctgttctccgcgacgatgcccgcgccgatccgccgcatctcc
cggcagtatctgcgtgacccggtcgagatcaccgtcagggcccggaccgtcaccgccgcg
aacacccggcaacggttcctgaccgtcgccgggccgcgcaagatggacgcgctcacgcgg
gtcctcgaagtcgagccgttcgaagcgatgatcatttttgtgcggacgaagtcggcgacg
gaggacgtcgccgagcggctgcgcagccgcgggttcgccaccgaggcgatcaacggcgac
ctcagccagccgcagcgtgagaagctcatcgcccagctccgcgacggcactctcgacctg
ctcgtcgccacggacgtcgccgcccgcggcctcgacgtcgaacggatcacccacgtcgtc
aactacgacatccccaccgacccggagtcgtacgtccaccgcatcggccgtaccggccgc
gccgggcgcagcggtgaggcgctgctgctcgtcacccccagggaaaagggtctgctcgcc
gcgatcgagaaggcgacccgtcagccgctcaccgagatggaactgcccaccccggcggat
gtgaacgcccggcgggtcgcgaagttccacgacgcgatcaccgccgcgctcgacgcgcca
gcccacgccgtgttcagggacctggtccttggctacgtcggcgagcatgacgtgccgctc
gccgacatcgccgcggcgttggccgtgatgacccgccaggaaccgggggagttcctcctc
ccaccggacaccgccccgcctgcccgtgagaagcccgcccgcggcgcgggcagaccacgg
ccggtctatgcctcctaccggatcggggtcgggcattaccagcgggtcaccccgggccag
atcgtcggggcgctcgccaacgagggcggcctggaccgcgcggacttcggccgtatcgac
atccgggctgattacagccttgtcgaactccccgccgacctgagcaaggatgcccagcgg
gcgttgacccgcacccgcatcgccggccagcccctcaacctgcgccccgaacggcccggc
cgggactccggcgcgcgacccggcgccaaccgccgaggaaaccccgccccctccgccggc
aggacgcgccgccccacctga
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