Pseudofrankia inefficax: FraEuI1c_4903
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Entry
FraEuI1c_4903 CDS
T01354
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fri
Pseudofrankia inefficax
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fri03016
]
FraEuI1c_4903
Enzymes [BR:
fri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FraEuI1c_4903
Transfer RNA biogenesis [BR:
fri03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FraEuI1c_4903
Prokaryotic type
tRNA splicing ligases
FraEuI1c_4903
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Herpes_UL56
Motif
Other DBs
NCBI-ProteinID:
ADP82893
UniProt:
E3J1T5
LinkDB
All DBs
Position
6012822..6014036
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AA seq
404 aa
AA seq
DB search
MMPLARLSGAQAPIWMWTQPENVESAALDQLRAIANLPYIHHHVTVMPDVHLGKGATVGS
VVAMRDAVSPAAVGVDIGCGMAALRTSLTANDLPDDLGPVRSAIEEAIPVGHRGHTEIST
RVRRNDDLWDAFDLLHPAVKGRLARAMAQLGTLGSGNHFIELCLDADDAVWMMLHSGSRN
IGKELADVHIGVAKSLAHNVGLPDRDLAVFLAGTPEMAAYRHDLHWAQDYARRNRETMLA
LYAQTLRRFFPALRVPCPPAEGPHAGDAAYASVNCHHNYVAEEHHYGADVLVTRKGAISA
RSGEYGIIPGSMGTGSYLVRGRGNPAAFTSAPHGAGRRMSRNKARRTFTVDDLMAQTAGV
ECRTDPGVLDEIPAAYKDIDEVIGYSDSLVEVVARLRAVLCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgatgccgctggcacgtctcagtggggcgcaggccccgatctggatgtggacccagccg
gagaacgttgagagcgccgcactcgaccagctgcgcgcgattgcgaaccttccttacatt
catcaccacgtgaccgtgatgcccgacgttcatctcggcaagggcgccaccgtcggttcc
gtcgtggcgatgcgggacgctgtctcgccggccgcggtcggcgtcgacatcggctgtggc
atggcggcgctgcgcaccagcctcaccgcgaacgacctgccggacgacctgggcccggtc
cgctcggcgatcgaggaggcgatcccggtcgggcaccgcggccacaccgagatctcgacc
cgggtccgccgcaacgacgacctgtgggacgccttcgacctgctgcatccggcggtgaag
ggccggctggcccgcgccatggcgcagctgggcaccctcggctcgggtaaccacttcatc
gagctgtgcctggacgccgacgacgcggtctggatgatgctgcactccggctcgcgcaac
atcggcaaggagctggccgacgtccacatcggggtcgcgaagagcctggcgcacaacgtc
gggctgcccgaccgggacctggccgtgttcctcgccggaacgccggagatggccgcctac
cgccatgacctgcactgggcccaggactacgcgcggcgcaaccgggagaccatgctggcc
ctgtacgcccagacgctgcgccggttcttcccggcgctgcgggtcccgtgcccaccggcg
gagggcccgcacgccggcgacgccgcctacgccagcgtgaactgccaccacaactacgtc
gccgaggagcatcactacggcgccgacgtgctggtgacccgcaagggcgcgatctcggcg
cggtccggcgagtacggcatcattcccggctccatggggacgggctcgtacctcgtccgc
ggccgcggcaacccggccgcgttcacgtcggccccgcacggggccggccggcggatgagc
cggaacaaggcgcgcaggacgttcaccgtcgacgacctgatggcccagaccgccggcgtc
gagtgccgcaccgacccgggggtgctcgacgagatccccgcggcctacaaggacatcgat
gaggtcatcggctatagcgacagccttgtagaagttgtggcccggctgcgcgcggttctc
tgcgtgaagggctga
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