Pseudofrankia inefficax: FraEuI1c_4916
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Entry
FraEuI1c_4916 CDS
T01354
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03030
DNA replication
fri03410
Base excision repair
fri03420
Nucleotide excision repair
fri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FraEuI1c_4916
03410 Base excision repair
FraEuI1c_4916
03420 Nucleotide excision repair
FraEuI1c_4916
03440 Homologous recombination
FraEuI1c_4916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fri03032
]
FraEuI1c_4916
03400 DNA repair and recombination proteins [BR:
fri03400
]
FraEuI1c_4916
Enzymes [BR:
fri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FraEuI1c_4916
DNA replication proteins [BR:
fri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FraEuI1c_4916
DNA repair and recombination proteins [BR:
fri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
FraEuI1c_4916
NER (nucleotide excision repair)
GGR (global genome repair) factors
FraEuI1c_4916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
NYN_YacP
HHH_5
DNA_pol_lambd_f
XPG_I
Motif
Other DBs
NCBI-ProteinID:
ADP82906
UniProt:
E3J1U8
LinkDB
All DBs
Position
complement(6037969..6040884)
Genome browser
AA seq
971 aa
AA seq
DB search
MSGSTSSTDLSSTDLADATLVADAPAPAAPADEAPAAADAPAKAPARRATRAPGSRAAAR
PAARTTASAARPAPTPGVPRLLLLDGNSLAYRAFFALPVENFSTTTGQPTNAVYGFTSML
INALRDEQPTHVAVAWDLPAPTFRHAQYAEYKAGRAETPSDFVGQISLIHQVCDALAVPS
LSAASYEADDIIATLATQGEAAGMDVLIVTGDRDALQLVTGQVTVLMTRKGISDMVRYTP
DEVEAKYGLTPAQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAAMVDRADEVS
GKAGQSLRDHLGDVIRNRSLTELARDVPLDRDPADLRLVPWDREAVHTLFDTLQFRVLRE
RLYQALAVVEPAAGDGGFAVEFDALAPGDVTEWLAEHTTGGARTGLHLRGGWGRGTGTVA
GIALAPPKGKAAWIDPTQLTPADEQALAGWLADPAKPKAAHDVKGPMLALAELGFTLAGV
TSDTALAAYLALPGQRSFDLGDLVLRYLHRELKADEAPSDGQLTLDVEVEGVEESAEAEV
DVVRARAVGELADALDGDLERRSAARLLRDIELPLLTVLAGMERAGIAADAEYLADLQSQ
YGTEVTKVVEAAHEIVGRPFNLGSPKQLQQILFEELGLPKTKKIKTGYTTDADALAWLAT
NSEHPLIPTLLRHRDVARLKTVVESLLPMIDDAGRIHTTFNQMIAATGRLSSTDPNLQNI
PIRTAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDAGLIEAFASGEDLHTFVA
AQAFNLPVAEVDPELRRRIKAMSYGLAYGLSAYGLATQLGIHPDEARDQMEAYFARFGGV
RDFLRGVVDQARKDGYTETILGRRRYLPDLTSDNSQRRQMAERMALNAPIQGSAADIIKI
AMLGVDRGLRDAGLRSRLLLQVHDELVLEIAPGERERAEALVRAEMANAYTMSVPLEVSV
GSGHTWDDAAH
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
gtgtccggttcgacgagcagcacagacctaagcagcacagacctggccgacgcgaccctg
gtcgccgacgcccccgccccggcggcgccggccgacgaggcgccagcggccgccgacgcg
ccggccaaggcccccgcgcggcgggccacccgggcgccgggctcacgcgcagcggccagg
ccggcggcgcggacgacggcgtcggccgccaggcccgcgcccaccccgggggtgccccgc
ctgctgctgctcgacgggaactcgctggcctaccgggccttcttcgcgcttccggtggag
aacttctcgaccacgacggggcagccgacgaacgcggtctacggcttcacctcgatgctg
atcaacgcgctgcgcgacgagcagccgacccacgtcgccgtcgcctgggacctgccggcg
ccgaccttccggcacgcgcagtacgccgagtacaaggcgggccgggccgagaccccgagc
gacttcgtcggccagatcagcctgatccaccaggtctgcgacgcgctcgcggtgccgagc
ctctcggccgccagctacgaggcggacgacatcatcgcgacgctggcgacccagggcgag
gcggccggcatggacgtcctcatcgtcaccggggaccgcgacgccctccagctcgtcacc
ggccaggtcaccgtcctgatgacgcgcaagggcatcagcgacatggtccggtacaccccg
gacgaggtcgaggccaagtacggcctgacccctgcgcagtacccggacttcgcggcgctg
cgcggtgacccgtccgacaacctgccgtcggtccccggggtgggggagaagaccgccacc
aagtggatccagcagttcggcagcctggccgcgatggtcgaccgggccgacgaggtcagc
ggcaaggccggccagtcgctgcgcgaccatctcggcgacgtgatccgcaaccggagcctc
accgagctcgcccgcgacgtcccgctcgaccgggaccctgccgacctgcgcctggtgccg
tgggaccgggaggccgtgcacaccctgttcgacacgctgcagttccgggtgctgcgcgag
cggctctaccaggcgctcgcggtcgtcgagccggccgccggcgacggtggcttcgccgtc
gagttcgacgcgctggcgcccggcgacgtcaccgagtggctcgccgagcacaccacgggt
ggcgcccgcaccggcctgcacctgcgcggcggctggggccggggcaccgggaccgtcgcc
ggcatcgccctggccccgcccaagggcaaggcggcctggatcgacccgacccagctcacc
ccggccgacgagcaggcgctcgccggctggctcgccgacccggcgaagcccaaggcggcc
cacgacgtcaagggcccgatgctcgccctggccgagctgggcttcaccctggccggcgtc
acgagcgacaccgcgctggccgcctacctggcgctgccgggccagcgctcgttcgacctg
ggcgacctggtgctgcgctacctgcaccgggagctgaaggccgacgaggcgccgtccgac
ggccagctgaccctcgacgtcgaggtcgagggcgtcgaggagtcggccgaggccgaggtc
gacgtggtccgagcccgggccgtcggggaactggccgacgcgctcgacggcgacctggag
cgccgctcggccgcccggctgctgcgcgacatcgagctgccgctgctgaccgtgctcgcc
ggcatggagcgggccggcatcgccgccgacgccgagtacctggccgacctgcagtcccag
tacggcaccgaggtgaccaaggtcgtcgaggcggcccacgagatcgtcggccggccgttc
aacctcggctcgcccaagcagctccagcagatcctgttcgaggagctgggcctgcccaag
accaagaagatcaagaccggctacacgacggatgccgacgcgctcgcgtggctggccacc
aactccgagcacccgctcatcccgacgctgctgcgccaccgcgacgtcgcccggctcaag
acggtcgtcgagtcgctgctgccgatgatcgacgacgcgggccggatccacacgacgttc
aaccagatgatcgcggccaccggccggctcagctcgaccgacccgaacctgcagaacatc
ccgatccggaccgccgagggccgccagatccggcgcgccttcgtggtcggccccggctac
gagacgctgctgacggcggactactcgcagatcgagatgcggatcatggcgcacctctcc
ggggacgccggcctgatcgaggcgttcgcctccggcgaggacctgcacaccttcgtcgcg
gcccaggcgttcaacctgccggtcgccgaggtcgacccggagctgcgccgccggatcaag
gcgatgtcgtacgggctggcctacgggctgtccgcctacggcctggccacccagctcggc
atccacccggacgaggcccgggaccagatggaggcctatttcgcccggttcggcggagtg
cgcgacttcctgcgcggcgtcgtcgaccaggctcgcaaggacggctacaccgagacgatc
ctcgggcgccgccgctacctgcccgacctgaccagcgacaactcccagcgtcgtcagatg
gccgagcgcatggccctcaacgcgccgatccagggctcggccgcggacatcatcaagatc
gcgatgctgggcgtcgaccgtggcctgcgcgacgccgggctgcggtcccgcctgctcctg
caggtccacgacgagctcgtcctggagatcgccccgggcgagcgcgagcgggccgaggcc
ctggtccgcgccgagatggcgaacgcgtacaccatgtccgtcccgctggaggtctcggtc
ggctccggccacacctgggacgacgccgcccactag
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