Pseudofrankia inefficax: FraEuI1c_5544
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Entry
FraEuI1c_5544 CDS
T01354
Name
(GenBank) transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FraEuI1c_5544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fri03000
]
FraEuI1c_5544
03400 DNA repair and recombination proteins [BR:
fri03400
]
FraEuI1c_5544
Enzymes [BR:
fri01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
FraEuI1c_5544
Transcription factors [BR:
fri03000
]
Prokaryotic type
Helix-turn-helix
AraC family
FraEuI1c_5544
DNA repair and recombination proteins [BR:
fri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FraEuI1c_5544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
ADP83530
UniProt:
E3JC74
LinkDB
All DBs
Position
6795271..6796761
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AA seq
496 aa
AA seq
DB search
MYQDVERCVRAVQAKDERFDGWFFTAVLTTGIYCRPSCPATPPKPANMRFYPSAAAAQQA
GFRACKRCRPGAVPGSPQWNERADLVGRAMRLIADGLVDREGVPGLAARLGYSVRQLERQ
LFAELGAGPLALTRAQRAQTARLLIETTALPMADLAYAAGFASVRTFNDTVREVFALTPS
ELRARARSTVDPRTQGTLVLRLPFRRPLCPDNLFGHLAATAVPGVEEWRDGAYRRTLRLP
RGHGIVALRPTPDHVECRLTLSDLRDLTTAISRCRWLLDLDADPVAVDAQLGADEALAPL
VAKSPGRRVPRTTDPPEFALRAVLGQQVSTAAARTHAARLVAAHGEPVEDREGGLTHLFP
TPEALAELDPETLAMPRSRRATVSALVAALASGDLELDVGGDWEQARARLAALPGVGPWT
VESVAMRALGDPDAFVATDLGVRRAAEGLGLPARPAALTARAAAWRPWRAYAVQHLWSTS
DHPINQIPTPRTSDVS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaggacgttgagaggtgcgtgcgagccgtccaggcgaaggatgagcggttcgac
ggctggttcttcacggcggtgctcaccaccgggatctactgccggcccagctgcccggcg
acgccgcccaagcccgcgaacatgcggttctacccgagcgcggcggcggcgcagcaggcc
ggcttccgggcctgcaagcgctgccgcccaggggccgtgcccggttcaccgcagtggaac
gaacgcgctgacctggtcggccgggcgatgcggctgatcgccgacggtctggtcgaccgc
gagggcgtgccgggtctggccgcccggctcggctacagcgtgcgccagctcgaacggcag
ctgttcgccgagctcggggccgggccactcgcgctcacccgcgcccagcgggcgcagaca
gcccggctgctcatcgagaccaccgcgctaccgatggccgacctggcgtacgcggccggg
ttcgccagcgtgcgcacgttcaacgacaccgtccgggaggtcttcgccctcacacccagc
gagctgcgggcccgggcgaggtcgacggtggacccgaggacccagggcaccctggtgctg
cggctgccgttccggcgcccgctctgcccggacaacctgttcgggcacctggcggccacc
gcggtgccgggcgtcgaggaatggcgtgacggcgcgtaccgcaggaccctgcggctgccg
cgcgggcacggcatcgtggcgctgcggcccaccccggaccacgtcgagtgccggctgacg
ctgtccgacctgcgcgacctgaccacggcgatcagccgctgccgctggctgctcgacctg
gacgccgacccggtcgcggtcgacgcccagctcggcgccgacgaggcgctggccccgctg
gtcgccaagagccccggccggcgggtgccacgcaccacggacccgcccgagttcgcgctg
cgcgcggtgctcggccagcaggtctcgacggcggcggcccggacgcacgccgcccggctg
gtcgccgcgcacggggagccggtcgaggaccgggagggcgggctcacccacctcttcccg
acaccggaggcgctggccgagctggacccggagacgctggcgatgccgcggtcccggcgg
gcgacggtgagcgcgctggtcgccgcgctggcctcgggtgacctggagctcgacgtcggc
ggcgactgggagcaggccagggcccggctggcggcactgccgggggtgggcccgtggacc
gtcgagtcggtcgcgatgcgggccctcggcgaccccgacgcgttcgtggccacggatctc
ggggtgcgccgggcggccgagggcctcggcctgccggcccggccggccgcgttgacggcc
cgagccgccgcctggcggccgtggcgcgcctacgccgtccagcacctctggtccaccagc
gaccacccgatcaaccagattccgaccccaaggacgagcgatgtctcctaa
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