Pseudofrankia inefficax: FraEuI1c_5776
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Entry
FraEuI1c_5776 CDS
T01354
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fri
Pseudofrankia inefficax
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fri03019
]
FraEuI1c_5776
Enzymes [BR:
fri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FraEuI1c_5776
Messenger RNA biogenesis [BR:
fri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FraEuI1c_5776
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
WHD_HA2
nSTAND_NTPase5
NACHT
PhoH
Motif
Other DBs
NCBI-ProteinID:
ADP83760
UniProt:
E3IVV8
LinkDB
All DBs
Position
complement(7110536..7115182)
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AA seq
1548 aa
AA seq
DB search
MSAVDRLVCETVCRRRDPTPDRLALESESLVAVTSSPAVQPAASPAVGSGESAASADAVD
PMDAPNRPAASGLKPSERSGRPDRKRRPGHSGGETGAGRGPAARRERDGGRPVELGAAER
TELAGLSARLPALMLRDGHRLARRLDAVRHDPDAESRARTIPAITDEVETAEIRVALRRD
AVPALKYPAELPVSQRKDEILAAIRDNQVVIVAGETGSGKTTQIPKICLELGRGVTGLIG
HTQPRRLAARTVADRIAEETGAGSLGGIIGYQVRFTDQVGDDTLVKLMTDGILLAELGTD
RLLRQYDTLIIDEAHERSLNIDFILGYLRRILPRRPDLKVVITSATIETERFSRHFGDAP
IIEVSGRTYPVEVRYRPVVDPDDPEADPDRDVITAICDAVDELSAEGLGDVLVFLSGERE
IRDTADALARRPSKELLPREILPLYARLSTAEQHRVFQPHPGRRIVLATNVAETSLTVPG
IKYVVDAGTARVSRYSHRLKVQRLPIEPVSQASANQRAGRCGRTSDGICVRLYAEDDFDA
RPEYTDPEILRTNLASVILSMASLGLGEVADYPFLDPPDPRQVTDGLALLHELGAFEAVR
PSRASAPVAPVTPAAPAGPAAPAGSAGSVDPAERAGEGRTPRLTPLGRRLARLPIDPRLA
RMILAADEQGALAEVLIITAALAVGDVRERPADAQQAATEKHARFTEPTSDFLGYLNLWN
YLREKAAELSSNQFRRLCRAEYLHYLRVREWQDVHSQLRQAARSLGLSTNSAPASPQQVH
SALLTGLLSHIGLFDPEKRDYAGARGARFAVFPGSALFKKPPRWVVAAELVETSRLWGRV
AAKIEPEWVEPLAGHLIRRSYSEPHWSRRSAAVLATEKVTLYGVPIVAARSVNYSGIDPA
LCRELFIRHALVEGDWETKHAFFAENSRLLSDAADLEHRARRRDIVVDDQTIFDFYDARI
PVDVVSGRHFDAWWKKTRPRTPGLLTFDPAMLVSETAKGVRADDFPDSWPAGRDGEHRVS
LTYQFEPGSAADGVTAHIPLAILNQVEPDGFTWQVPGLREDLVTELIRSLPKALRRSYVP
APNYARAVLGRVGPADGPLLAVLERELNRIGGGTTVSRADLDLDRLPPHLRITFRVYDGT
GGRRTGGGQADDDGQAGRDGGGDRRQKSAESARRTLAEGKDLDELKRTLAPKLTAAVSAA
GGNLERTGLTGWGDLGTIPRTVERRAGRHQVRGFPALVAEPGGVALRVLATEADAARAHP
LGTRALLLASVASPIRYINTQLSNATKLALRHHPHDSVGALLDDAIAAAADALIAEAGGP
VWDEAGFERLRDEVRAELPERSLAVVRAAERVLTLAHDVETRIDALTGRPTAGRASARPV
QLTDLRSLGSAFAAAQGGKAQGGKAQSAKAQNGRAQGAANLSPALTASIEDLRRQLAELI
YPGFLAGAGADRLDDLARYLTGALRRLDRLPADATAEQPKLAKVTRVRTAYDELAADLLP
PGTAPGPDLTRLRWMIEELRISLFAQTLRTPYPVSEERLYRSMDELAP
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggccgtggaccggttggtgtgtgagaccgtctgtaggcggagagacccgaccccg
gaccgcctcgccctcgaatcggagagtctcgtcgccgtgacatcgtcgccagccgtgcag
ccggccgcttcgccggccgtcggctccggcgagtcggccgcgtccgccgacgcggttgac
ccgatggacgccccgaatcggccggctgccagcggcctcaagccgtccgagcgctccggg
cggccggaccggaagcgccggcctgggcactccggcggcgagaccggggcgggccgcggg
ccagcggcccggcgggagcgggatggtgggcggcccgtcgagttgggcgccgccgaacgc
acggagctcgctggcctgtcggcccggctgccggcgctcatgctgcgcgatgggcatcgg
ctggcgcgccggctcgacgcggtccgccacgatccggacgccgagtcgcgggcgcgcacg
atccccgcgatcaccgatgaggtcgagacagccgagatcagggtcgcgctacgccgggac
gcggtgccagcgctgaagtacccggccgaactgcccgtcagccagcgcaaagacgagatc
ctcgcggctatccgggataaccaggtcgtcatcgtcgctggcgagaccggatcgggaaag
acgacccagatcccgaagatctgcctggagctcggccgcggcgtcaccggcctgatcggg
cacacacaaccccgccggctggccgcccggacggtcgccgaccgcatcgccgaggagacc
ggcgccgggagcctgggcgggatcatcggctaccaggtgcggttcaccgaccaggtcggc
gacgacaccctggtcaagctgatgacggacggcatcctgctcgccgagcttggtaccgac
cggttgttgcggcagtacgacactctgatcatcgacgaggcgcacgagcgcagcctcaac
atcgacttcattctcggctacctgcgccggatcctgccgcgccggccggacctgaaggtc
gtcatcacgtcggcgacgatcgagacagagcggttctcccggcatttcggcgacgcaccg
atcatcgaggtgtccgggcgtacctacccggtcgaggtccgctaccggccggtggtcgac
cccgacgacccggaggcggacccggaccgggatgtcatcaccgcgatctgcgacgccgtc
gacgagctgtcggccgaggggctgggcgacgtcctggtgttcctgtccggtgagcgggaa
atccgggacaccgcggacgccctcgcgcgcaggccgagcaaagagctgctgccgcgcgag
atcctcccgttgtacgcgcggctgtccacggccgagcagcaccgggtcttccagccgcat
ccgggccgccgcatcgtgctcgcgacgaacgtcgccgagacctcgctgaccgttcctggc
atcaagtacgtggtcgacgcgggcaccgcgcgggtctcccggtacagccaccgcctcaag
gtccagcggttgccgatcgagccggtgtcgcaggcgtcggcgaaccagcgagccggccga
tgcggacggacgtccgacggcatctgcgtccggctctatgccgaggacgacttcgacgcc
aggcccgagtacaccgatccggagatcctgcgcacgaacctcgcgtcggtgatcctctcg
atggcgtcgctcgggctcggcgaggtggccgactacccgttcctcgacccgcccgacccg
cgccaggtcaccgacggcctggccctgctgcacgagctcggcgccttcgaggcggtccgc
cccagccgggcctcggctccggtcgcacccgtcaccccggccgcgcccgccggcccggcg
gcacccgccggctcggcagggtcggtggacccggcggagagagccggcgagggccggacg
ccgcgcctgacgccactcgggcggcggcttgcccggctgccgatcgacccgcggctcgcc
cggatgatcctggccgccgacgagcagggcgcgctggccgaggtcctgatcatcacggcg
gcgctcgcggtcggcgacgtccgggaacggcccgcggacgcccagcaggccgcgaccgag
aaacacgcacggttcaccgagccgacctcggacttcctcggctacctgaacctgtggaac
tacctgcgggaaaaggccgccgaactgagctcgaaccagttccgccggctgtgccgcgcc
gagtacctgcattacctgcgggtccgggagtggcaggacgtccacagccagctgcgccag
gcggcccggtctctcggcctgtccaccaactcggctccggccagcccgcagcaggtgcac
tccgcgctgctcaccgggctgctctcgcacatcggcctgttcgacccggagaagcgtgac
tacgcgggggcccgcggcgcccggttcgcggtgtttcccggctccgcgttgttcaagaag
ccgccgcgctgggtcgtcgccgccgagctggtcgagacctcccggctgtggggccgcgtc
gcggcgaagatcgagccggagtgggtcgagccgctggccgggcatctgatccgccggtcc
tacagcgagccgcactggtcgcgccggtccgctgccgtgctcgccaccgagaaggtgacg
ctgtacggcgtgccgatcgtcgccgcccggtcggtgaactacagcgggatcgacccggcg
ctgtgccgggaactgttcatccggcacgccctcgtcgagggtgactgggagacgaagcac
gcgttcttcgccgagaacagccggctgctttcggacgcggcggatctggagcaccgtgcc
cgccgccgcgacatcgtcgtggacgatcagacgatcttcgatttctatgacgcgcggatt
ccggtggacgtcgtctcggggcggcatttcgacgcctggtggaagaagactcgtccgcgc
acgcccggcctgctcacgttcgacccggcgatgttggtctcggagaccgccaagggagtg
cgggcggacgattttccggactcctggccggccggccgcgacggcgagcaccgggtctcg
ctgacctaccagttcgagcccggctcggcggccgacggcgtgaccgcgcacattccgctc
gccatcctcaaccaggtcgagccggacggcttcacctggcaggtgcccggactgcgcgag
gacctggtcaccgagctgatccggtcgctgccgaaggccctgcggcgcagctacgtgccc
gctccgaactacgcccgcgcggtgctggggcgggtcggtcccgccgacggcccgctgctg
gctgtcctcgaacgcgagctcaaccggatcggcggtggcaccaccgtgtcccgcgccgac
ctggacctcgaccggctgccgccgcacctgcggatcaccttccgggtctatgacgggacc
ggcggccggcggaccggcggcggacaggccgacgacgacggacaggctggccgggacggc
ggcggagatcgtcgccagaagtcggccgagtcggcgcggcggacccttgccgagggcaag
gacctcgacgagctgaagcgcacactggcgcccaagctcaccgcggcggtgtcggcggcc
ggcggcaacctggaacgcaccggcctgaccggctggggcgacctcggcaccatcccgcgc
accgtcgagcgcagagcgggccgccaccaggtccgcggcttcccggcgctggtggccgag
cccggcggggtggcgctgcgggtgctggcgaccgaggcggacgcggcccgcgcccacccg
ctcggcacccgcgcgctgctgctcgcctccgtcgcgtccccgatccggtacatcaacacc
cagctgtccaacgcgaccaagctggcgctgcgccaccacccgcatgacagcgtcggcgcg
ctgctcgacgacgccatcgcggcggcggccgacgcgctgatcgccgaggcaggcggcccg
gtctgggacgaggccggcttcgagcgccttcgcgacgaggtgcgcgccgagctgcccgag
cgctccctcgccgtcgtccgggccgccgaacgggtgctgacgttggcgcacgacgtcgag
acccggatcgacgccctgacaggtcgtccgaccgccggtcgggcgtcggcgcgtccggtg
cagctgaccgacctgcggtcgctcggctcggcgttcgccgccgctcagggcggcaaggcg
cagggcggtaaggctcagagcgcgaaggcccagaacggaagggcccagggcgccgcgaac
ctgagccccgcgctcacggcgagcatcgaggacctgcgccgccagctcgccgagctgatc
tatcccggttttctcgccggcgccggtgccgaccgcctcgacgatctggcccggtacctg
acgggcgccctgcgccggctcgaccggctcccggccgatgccaccgccgaacagccgaag
ctcgccaaggtcacccgggttcggaccgcctacgacgagctggcggccgatcttctcccg
cccgggaccgcgcccggccccgacctgacccggctccgctggatgatcgaggaactgcgg
atcagcctcttcgcgcagaccctccgcaccccgtaccccgtctcggaggagcgcctctac
cggtccatggacgaactcgccccctga
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